[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
962	7898609	NM_000929	PLA2G5		phospholipase A2, group V

Fetching correlation data, please wait...
Getting list of correlations for id 962.
Getting list of p-values for id 962.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.128 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7898609	8049509	NM_015893	PRLH	0.790483	1.161251e-23	2.012099e-19	2.012099e-19
2	7898609	8071489	NM_005446	P2RX6	0.764013	2.552889e-21	4.423391e-17	2.211696e-17
3	7898609	8095048	NM_030917	FIP1L1	-0.754975	1.373354e-20	2.379610e-16	7.932034e-17
4	7898609	7927367	NM_001040084	ANXA8	0.748891	4.092834e-20	7.091654e-16	1.772913e-16
5	7898609	8037482	NM_001102597	CEACAM20	0.748308	4.537517e-20	7.862156e-16	1.572431e-16
6	7898609	8036072	NM_207392	KRTDAP	0.747750	5.006502e-20	8.674765e-16	1.445794e-16
7	7898609	7927307	NM_001630	ANXA8L2	0.746335	6.416065e-20	1.111712e-15	1.588159e-16
8	7898609	8172876	NM_006306	SMC1A	-0.743612	1.029702e-19	1.784165e-15	2.230207e-16
9	7898609	8131056	NM_017781	CYP2W1	0.740365	1.796074e-19	3.112057e-15	3.457841e-16
10	7898609	7936762	NM_001001976	ATE1	-0.739626	2.036212e-19	3.528145e-15	3.528145e-16
11	7898609	8069910	NM_020706	SFRS15	-0.732733	6.433084e-19	1.114660e-14	1.013328e-15
12	7898609	8010113	NM_144677	MGAT5B	0.731657	7.673556e-19	1.329597e-14	1.107998e-15
13	7898609	8125568	NM_080680	COL11A2	0.730919	8.654799e-19	1.499617e-14	1.153552e-15
14	7898609	7903632	NM_001408	CELSR2	0.727354	1.540238e-18	2.668770e-14	1.906264e-15
15	7898609	7986960	NM_015307	FAM189A1	0.726651	1.723813e-18	2.986850e-14	1.991233e-15
16	7898609	8098421	ENST00000410927		0.725807	1.972498e-18	3.417747e-14	2.136092e-15
17	7898609	8087907	NM_020163	SEMA3G	0.724577	2.398207e-18	4.155374e-14	2.444337e-15
18	7898609	7896921	NM_152228	TAS1R3	0.724459	2.443589e-18	4.234006e-14	2.352226e-15
19	7898609	7934367	NM_004034	ANXA7	-0.721891	3.661277e-18	6.343895e-14	3.338892e-15
20	7898609	8158081	BC141809	C9orf117	0.720856	4.304109e-18	7.457729e-14	3.728864e-15
21	7898609	8025697	NM_012218	ILF3	-0.720406	4.616345e-18	7.998742e-14	3.808925e-15
22	7898609	8028407	NM_000540	RYR1	0.718941	5.794108e-18	1.003945e-13	4.563387e-15
23	7898609	7931519	NM_152643	KNDC1	0.716386	8.582367e-18	1.487067e-13	6.465507e-15
24	7898609	7973510	NM_006032	CPNE6	0.715636	9.624181e-18	1.667582e-13	6.948258e-15
25	7898609	7999634	NM_006985	NPIP	-0.715504	9.819098e-18	1.701355e-13	6.805420e-15
26	7898609	7937612	NM_002458	MUC5B	0.715241	1.022149e-17	1.771078e-13	6.811838e-15
27	7898609	8035648	NM_001001524	TM6SF2	0.714258	1.186593e-17	2.056010e-13	7.614850e-15
28	7898609	8096556	NM_015143	METAP1	-0.713948	1.243697e-17	2.154953e-13	7.696261e-15
29	7898609	7975747	NM_001933	DLST	-0.713930	1.246980e-17	2.160642e-13	7.450488e-15
30	7898609	8030753	NM_001030047	KLK3	0.712704	1.500442e-17	2.599815e-13	8.666051e-15
31	7898609	8110894	NM_017755	NSUN2	-0.712275	1.600532e-17	2.773242e-13	8.945942e-15
32	7898609	8004842	NM_173728	ARHGEF15	0.711848	1.706602e-17	2.957030e-13	9.240717e-15
33	7898609	8049152	NM_000751	CHRND	0.710903	1.965731e-17	3.406022e-13	1.032128e-14
34	7898609	8161164	NM_001004487	OR13J1	0.710890	1.969538e-17	3.412618e-13	1.003711e-14
35	7898609	8110169	NM_014613	FAF2	-0.710879	1.972832e-17	3.418326e-13	9.766646e-15
36	7898609	8116033	NM_000505	F12	0.710635	2.045971e-17	3.545054e-13	9.847373e-15
37	7898609	7913300	NM_016287	HP1BP3	-0.710326	2.142501e-17	3.712312e-13	1.003327e-14
38	7898609	8002289	NM_005652	TERF2	-0.710006	2.247286e-17	3.893872e-13	1.024703e-14
39	7898609	7997801	NM_013278	IL17C	0.709977	2.257029e-17	3.910755e-13	1.002758e-14
40	7898609	8100902	NM_032217	ANKRD17	-0.709733	2.340403e-17	4.055217e-13	1.013804e-14
41	7898609	7936614	NM_003750	EIF3A	-0.709372	2.469351e-17	4.278645e-13	1.043572e-14
42	7898609	8017776	NM_014877	HELZ	-0.708823	2.678692e-17	4.641369e-13	1.105088e-14
43	7898609	7912863	NR_002729	MST1P9	0.708577	2.778155e-17	4.813709e-13	1.119467e-14
44	7898609	7959402	NM_030765	B3GNT4	0.708562	2.784094e-17	4.823999e-13	1.096363e-14
45	7898609	7914667	NM_052896	CSMD2	0.708450	2.830448e-17	4.904316e-13	1.089848e-14
46	7898609	8086057	NM_014517	UBP1	-0.708132	2.966717e-17	5.140431e-13	1.117485e-14
47	7898609	8009382	NM_004459	BPTF	-0.708095	2.983260e-17	5.169094e-13	1.099807e-14
48	7898609	7990683	NM_015162	ACSBG1	0.707203	3.401870e-17	5.894421e-13	1.228004e-14
49	7898609	8170716	NM_005393	PLXNB3	0.707144	3.431761e-17	5.946212e-13	1.213513e-14
50	7898609	7913450	NM_005529	HSPG2	0.706350	3.855997e-17	6.681287e-13	1.336257e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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