[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3343	8099107	NM_017816	LYAR		Ly1 antibody reactive homolog (mouse)

Fetching correlation data, please wait...
Getting list of correlations for id 3343.
Getting list of p-values for id 3343.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8099107	8178322	NM_006937	SUMO2	0.765019	2.107127e-21	3.651018e-17	3.651018e-17
2	8099107	7918345	NM_002790	PSMA5	0.762341	3.504979e-21	6.073076e-17	3.036538e-17
3	8099107	7950644	NM_004549	NDUFC2	0.762052	3.701393e-21	6.413403e-17	2.137801e-17
4	8099107	8100834	NM_002092	GRSF1	0.751962	2.367729e-20	4.102564e-16	1.025641e-16
5	8099107	8041000	NM_007266	GPN1	0.751559	2.545556e-20	4.410686e-16	8.821371e-17
6	8099107	8117888	NM_006325	RAN	0.751494	2.575298e-20	4.462218e-16	7.437030e-17
7	8099107	8174636	NM_006937	SUMO2	0.746026	6.772335e-20	1.173443e-15	1.676346e-16
8	8099107	8018315	NM_006937	SUMO2	0.743518	1.046532e-19	1.813326e-15	2.266657e-16
9	8099107	8148821	NM_001008271	SCXA	-0.742190	1.315298e-19	2.279017e-15	2.532241e-16
10	8099107	8148796	NM_001008271	SCXA	-0.742190	1.315298e-19	2.279017e-15	2.279017e-16
11	8099107	8132070	NM_002047	GARS	0.742056	1.345749e-19	2.331780e-15	2.119800e-16
12	8099107	8081867	NM_016589	C3orf1	0.740260	1.828709e-19	3.168604e-15	2.640503e-16
13	8099107	7975976	NM_012111	AHSA1	0.739956	1.925359e-19	3.336070e-15	2.566208e-16
14	8099107	8053763	NM_031902	MRPS5	0.737679	2.828427e-19	4.900815e-15	3.500582e-16
15	8099107	7967149	NM_016237	ANAPC5	0.737240	3.044636e-19	5.275441e-15	3.516961e-16
16	8099107	8050278	NM_005742	PDIA6	0.735800	3.872963e-19	6.710682e-15	4.194177e-16
17	8099107	8103011	NM_199324	OTUD4	0.733976	5.241388e-19	9.081753e-15	5.342208e-16
18	8099107	8139706	NM_014302	SEC61G	0.733253	5.905370e-19	1.023224e-14	5.684575e-16
19	8099107	7931187	NM_004725	BUB3	0.731878	7.401192e-19	1.282405e-14	6.749498e-16
20	8099107	8052562	NM_006430	CCT4	0.730637	9.062033e-19	1.570178e-14	7.850892e-16
21	8099107	7969271	NM_001130912	SUGT1	0.729775	1.042518e-18	1.806371e-14	8.601768e-16
22	8099107	8094704	NM_005339	UBE2K	0.729460	1.097057e-18	1.900871e-14	8.640322e-16
23	8099107	8020806	NM_017831	RNF125	0.728160	1.353173e-18	2.344642e-14	1.019410e-15
24	8099107	8169519	NM_019045	WDR44	0.726958	1.641219e-18	2.843740e-14	1.184892e-15
25	8099107	8135576	NM_015641	TES	0.726554	1.750715e-18	3.033464e-14	1.213385e-15
26	8099107	7904287	NM_001767	CD2	0.726194	1.854279e-18	3.212908e-14	1.235734e-15
27	8099107	7920317	NM_004515	ILF2	0.724455	2.445020e-18	4.236487e-14	1.569069e-15
28	8099107	8163784	NM_012164	FBXW2	0.723789	2.716636e-18	4.707115e-14	1.681113e-15
29	8099107	7903281	NM_012243	SLC35A3	0.722554	3.299649e-18	5.717303e-14	1.971484e-15
30	8099107	8084092	NM_002492	NDUFB5	0.722460	3.348623e-18	5.802159e-14	1.934053e-15
31	8099107	7942553	NM_014752	SPCS2	0.722449	3.354796e-18	5.812854e-14	1.875114e-15
32	8099107	8043218	NM_006590	USP39	0.722319	3.423830e-18	5.932470e-14	1.853897e-15
33	8099107	7897179	NM_001126240	TP73	-0.721998	3.600482e-18	6.238555e-14	1.890471e-15
34	8099107	8132943	NM_001762	CCT6A	0.721964	3.619608e-18	6.271694e-14	1.844616e-15
35	8099107	8055476	NR_024058	YWHAE	0.721958	3.623196e-18	6.277911e-14	1.793689e-15
36	8099107	7946439	NM_020644	TMEM9B	0.721319	4.003725e-18	6.937254e-14	1.927015e-15
37	8099107	7927367	NM_001040084	ANXA8	-0.720900	4.274355e-18	7.406176e-14	2.001669e-15
38	8099107	7906852	NM_175866	UHMK1	0.720899	4.275105e-18	7.407475e-14	1.949335e-15
39	8099107	8137183	NM_198455	SSPO	-0.720871	4.293892e-18	7.440027e-14	1.907699e-15
40	8099107	7964250	NM_006601	PTGES3	0.720560	4.507144e-18	7.809528e-14	1.952382e-15
41	8099107	7934852	NM_005271	GLUD1	0.720288	4.702214e-18	8.147527e-14	1.987202e-15
42	8099107	8042335	NM_003375	VDAC2	0.720277	4.710154e-18	8.161284e-14	1.943163e-15
43	8099107	8164766	NM_152572	C9orf98	-0.719000	5.741296e-18	9.947944e-14	2.313475e-15
44	8099107	8038292	NM_033043	CGB5	-0.717940	6.761617e-18	1.171585e-13	2.662694e-15
45	8099107	8157696	NM_001001923	OR5C1	-0.717445	7.297083e-18	1.264366e-13	2.809701e-15
46	8099107	7933582	NM_006327	TIMM23	0.717252	7.516067e-18	1.302309e-13	2.831106e-15
47	8099107	7956937	NM_015646	RAP1B	0.717028	7.778861e-18	1.347843e-13	2.867752e-15
48	8099107	7971820	NM_016075	VPS36	0.714578	1.130453e-17	1.958737e-13	4.080701e-15
49	8099107	8150928	NM_003580	NSMAF	0.714566	1.132530e-17	1.962335e-13	4.004765e-15
50	8099107	7939137	NM_006360	EIF3M	0.714513	1.141710e-17	1.978241e-13	3.956482e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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