[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2470	8002882	NM_021615	CHST6		carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6

Fetching correlation data, please wait...
Getting list of correlations for id 2470.
Getting list of p-values for id 2470.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8002882	7919301	AK128227	LOC100130236	0.786023	3.038248e-23	5.264373e-19	5.264373e-19
2	8002882	7936882	NM_001146340	NKX1-2	0.783351	5.346489e-23	9.263861e-19	4.631931e-19
3	8002882	8038299	NM_033142	CGB7	0.783310	5.393117e-23	9.344654e-19	3.114885e-19
4	8002882	8137330	ENST00000356058		0.776118	2.374628e-22	4.114518e-18	1.028629e-18
5	8002882	7991939	NM_145294	WDR90	0.775949	2.457440e-22	4.258006e-18	8.516013e-19
6	8002882	8048551	NM_005876	SPEG	0.775114	2.907893e-22	5.038505e-18	8.397509e-19
7	8002882	8062108	NM_006404	PROCR	0.774945	3.008595e-22	5.212992e-18	7.447132e-19
8	8002882	8076169	NM_014293	NPTXR	0.774516	3.279698e-22	5.682732e-18	7.103415e-19
9	8002882	7915385	NM_001956	EDN2	0.773646	3.903323e-22	6.763287e-18	7.514764e-19
10	8002882	8131087	NM_001080461	UNCX	0.772751	4.665114e-22	8.083243e-18	8.083243e-19
11	8002882	7996219	NM_020465	NDRG4	0.771310	6.206944e-22	1.075477e-17	9.777066e-19
12	8002882	8074131	NM_001080420	SHANK3	0.770314	7.551610e-22	1.308468e-17	1.090390e-18
13	8002882	8151621	AF495523	REXO1L1	0.769651	8.599313e-22	1.490003e-17	1.146156e-18
14	8002882	8151613	AF495523	REXO1L1	0.769651	8.599313e-22	1.490003e-17	1.064288e-18
15	8002882	8151605	AF495523	REXO1L1	0.769651	8.599313e-22	1.490003e-17	9.933353e-19
16	8002882	8151625	AF495523	REXO1L1	0.769651	8.599313e-22	1.490003e-17	9.312519e-19
17	8002882	8151617	AF495523	REXO1L1	0.769651	8.599313e-22	1.490003e-17	8.764723e-19
18	8002882	8005328	NM_016239	MYO15A	0.767925	1.203873e-21	2.085950e-17	1.158861e-18
19	8002882	8014269	NM_139285	GAS2L2	0.766786	1.500562e-21	2.600025e-17	1.368434e-18
20	8002882	8131056	NM_017781	CYP2W1	0.766127	1.703697e-21	2.951995e-17	1.475998e-18
21	8002882	7928291	NM_004273	CHST3	0.766104	1.711300e-21	2.965169e-17	1.411985e-18
22	8002882	7935983	NM_005029	PITX3	0.765244	2.018240e-21	3.497005e-17	1.589548e-18
23	8002882	8056041			0.764013	2.552726e-21	4.423107e-17	1.923090e-18
24	8002882	8059186	NM_002846	PTPRN	0.763480	2.825236e-21	4.895287e-17	2.039703e-18
25	8002882	8153346	NM_023946	LYNX1	0.763431	2.851651e-21	4.941055e-17	1.976422e-18
26	8002882	8053728	NM_000798	DRD5	0.762852	3.181890e-21	5.513260e-17	2.120485e-18
27	8002882	8137336	NM_004769	ACCN3	0.759899	5.541474e-21	9.601712e-17	3.556189e-18
28	8002882	7998414	ENST00000428636		0.759251	6.251981e-21	1.083281e-16	3.868860e-18
29	8002882	7986960	NM_015307	FAM189A1	0.759051	6.489534e-21	1.124442e-16	3.877385e-18
30	8002882	8008228	NM_138281	DLX4	0.758025	7.847623e-21	1.359758e-16	4.532525e-18
31	8002882	8158666	AK128680	HMCN2	0.757178	9.174736e-21	1.589707e-16	5.128086e-18
32	8002882	7969372	ENST00000362412		0.754821	1.412402e-20	2.447269e-16	7.647715e-18
33	8002882	8159036	NM_139025	ADAMTS13	0.754092	1.612185e-20	2.793433e-16	8.464949e-18
34	8002882	8031076	NM_031896	CACNG7	0.753160	1.908438e-20	3.306750e-16	9.725735e-18
35	8002882	8067409	NM_005560	LAMA5	0.752331	2.216045e-20	3.839742e-16	1.097069e-17
36	8002882	7927367	NM_001040084	ANXA8	0.752120	2.301552e-20	3.987899e-16	1.107750e-17
37	8002882	8037732	NM_001029861	NANOS2	0.751080	2.772980e-20	4.804743e-16	1.298579e-17
38	8002882	8031157	NM_020659	TTYH1	0.750938	2.844290e-20	4.928301e-16	1.296921e-17
39	8002882	8174469	NM_012282	KCNE1L	0.750693	2.971582e-20	5.148860e-16	1.320221e-17
40	8002882	8172876	NM_006306	SMC1A	-0.750348	3.160409e-20	5.476040e-16	1.369010e-17
41	8002882	8155569	BC119675	FAM27E3	0.750086	3.310831e-20	5.736676e-16	1.399189e-17
42	8002882	8161426	BC119675	FAM27E3	0.750086	3.310831e-20	5.736676e-16	1.365875e-17
43	8002882	8161437	BC119675	FAM27E3	0.750086	3.310831e-20	5.736676e-16	1.334111e-17
44	8002882	8001014	NM_173502	PRSS36	0.749763	3.506778e-20	6.076194e-16	1.380953e-17
45	8002882	8110382	NM_030567	PRR7	0.748560	4.339529e-20	7.519101e-16	1.670911e-17
46	8002882	8164562	NM_199350	C9orf50	0.748399	4.464623e-20	7.735852e-16	1.681707e-17
47	8002882	8038288	NM_033377	CGB1	0.747983	4.804472e-20	8.324708e-16	1.771215e-17
48	8002882	8030181	NM_033378	CGB2	0.747839	4.928096e-20	8.538911e-16	1.778940e-17
49	8002882	8066668	NM_020967	NCOA5	-0.747769	4.989747e-20	8.645734e-16	1.764436e-17
50	8002882	8070771	NM_198691	KRTAP10-1	0.747494	5.236961e-20	9.074083e-16	1.814817e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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