[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
405	7979906	NM_016468	COX16		COX16 cytochrome c oxidase assembly homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 405.
Getting list of p-values for id 405.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.143 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7979906	7971375	NM_003295	TPT1	0.720776	4.357945e-18	7.551011e-14	7.551011e-14
2	7979906	7898875	NM_000975	RPL11	0.715695	9.538421e-18	1.652722e-13	8.263611e-14
3	7979906	8035829	NM_000995	RPL34	0.703953	5.469615e-17	9.477202e-13	3.159067e-13
4	7979906	7917906	NM_000971	RPL7	0.698302	1.230129e-16	2.131445e-12	5.328611e-13
5	7979906	8040036	NM_001011	RPS7	0.696866	1.506765e-16	2.610772e-12	5.221544e-13
6	7979906	7946807	NM_021029	RPL36A	0.694532	2.090437e-16	3.622101e-12	6.036834e-13
7	7979906	8151376	NM_000971	RPL7	0.692832	2.648091e-16	4.588348e-12	6.554783e-13
8	7979906	8168843	NM_021029	RPL36A	0.692374	2.821656e-16	4.889083e-12	6.111353e-13
9	7979906	8109222	NM_000971	RPL7	0.688965	4.507854e-16	7.810759e-12	8.678621e-13
10	7979906	8138361	NM_021029	RPL36A	0.686109	6.641179e-16	1.150717e-11	1.150717e-12
11	7979906	7990916	NM_001021	RPS17	0.681566	1.219288e-15	2.112661e-11	1.920601e-12
12	7979906	7990965	NM_001021	RPS17	0.681566	1.219288e-15	2.112661e-11	1.760551e-12
13	7979906	8127526	NM_001000	RPL39	0.680472	1.409026e-15	2.441419e-11	1.878014e-12
14	7979906	7990949	NM_000661	RPL9	0.677947	1.962685e-15	3.400744e-11	2.429103e-12
15	7979906	8099887	NM_001024921	RPL9	0.677908	1.972731e-15	3.418150e-11	2.278767e-12
16	7979906	7990898	NM_000661	RPL9	0.677018	2.215515e-15	3.838822e-11	2.399264e-12
17	7979906	8174710	NM_001000	RPL39	0.676855	2.263027e-15	3.921148e-11	2.306557e-12
18	7979906	8171834	NM_000661	RPL9	0.676049	2.512797e-15	4.353924e-11	2.418847e-12
19	7979906	7979864	NM_004450	ERH	0.673367	3.551281e-15	6.153305e-11	3.238581e-12
20	7979906	8061364	NM_021104	RPL41	0.671304	4.623002e-15	8.010276e-11	4.005138e-12
21	7979906	7902448	NM_001035006	RPL17	0.664326	1.110485e-14	1.924138e-10	9.162562e-12
22	7979906	7973936	NM_002791	PSMA6	0.664218	1.125498e-14	1.950150e-10	8.864318e-12
23	7979906	8075691	NM_021104	RPL41	0.663222	1.272968e-14	2.205672e-10	9.589878e-12
24	7979906	8151935	NM_000989	RPL30	0.662876	1.328457e-14	2.301818e-10	9.590910e-12
25	7979906	8105432	NM_021104	RPL41	0.662530	1.386298e-14	2.402038e-10	9.608154e-12
26	7979906	8043197	NM_003761	VAMP8	0.658811	2.183951e-14	3.784132e-10	1.455435e-11
27	7979906	7903582	NM_001035006	RPL17	0.652543	4.631368e-14	8.024771e-10	2.972137e-11
28	7979906	8097782	NM_001006	RPS3A	0.651133	5.471775e-14	9.480944e-10	3.386051e-11
29	7979906	7955768	NM_002624	PFDN5	0.650411	5.956926e-14	1.032157e-9	3.559161e-11
30	7979906	8141222	NM_001006	RPS3A	0.649411	6.698936e-14	1.160725e-9	3.869082e-11
31	7979906	7999827	NM_001019	RPS15A	0.646366	9.551041e-14	1.654909e-9	5.338416e-11
32	7979906	7957052	NM_006431	CCT2	0.645675	1.034561e-13	1.792584e-9	5.601825e-11
33	7979906	7988031	NM_001006	RPS3A	0.637010	2.771162e-13	4.801593e-9	1.455028e-10
34	7979906	7923438	NM_001030	RPS27	0.633800	3.960723e-13	6.862745e-9	2.018454e-10
35	7979906	8085026	NM_000996	RPL35A	0.632047	4.805698e-13	8.326833e-9	2.379095e-10
36	7979906	8078248	NM_002128	HMGB1	0.631158	5.297797e-13	9.179493e-9	2.549859e-10
37	7979906	8103222	GENSCAN00000040988		0.631094	5.335264e-13	9.244412e-9	2.498490e-10
38	7979906	8067978	NM_021130	PPIA	0.630713	5.562325e-13	9.637840e-9	2.536274e-10
39	7979906	8106776	NM_001867	COX7C	0.630385	5.765498e-13	9.989879e-9	2.561507e-10
40	7979906	8065325	ENST00000457423		0.630373	5.773189e-13	1.000320e-8	2.500801e-10
41	7979906	8141050	NM_001006	RPS3A	0.628499	7.079776e-13	1.226713e-8	2.991983e-10
42	7979906	7921667	NM_001778	CD48	0.626615	8.680021e-13	1.503987e-8	3.580922e-10
43	7979906	8089249	NM_000986	RPL24	0.622892	1.293163e-12	2.240663e-8	5.210844e-10
44	7979906	7899160	NM_001803	CD52	0.622475	1.351707e-12	2.342103e-8	5.322961e-10
45	7979906	8121031	NM_006416	SLC35A1	0.622308	1.375954e-12	2.384115e-8	5.298033e-10
46	7979906	8101718	NM_032906	PIGY	0.621901	1.436717e-12	2.489400e-8	5.411739e-10
47	7979906	7944216	NM_006476	ATP5L	0.621799	1.452251e-12	2.516315e-8	5.353862e-10
48	7979906	8125835	NM_001014	RPS10	0.619261	1.898063e-12	3.288774e-8	6.851613e-10
49	7979906	7990090	ENST00000401798		0.618301	2.098970e-12	3.636886e-8	7.422215e-10
50	7979906	8079019	NM_001030	RPS27	0.616249	2.599710e-12	4.504518e-8	9.009035e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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