[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6270	8069998	AF282851	C21orf59		chromosome 21 open reading frame 59

Fetching correlation data, please wait...
Getting list of correlations for id 6270.
Getting list of p-values for id 6270.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8069998	7897404	NM_007262	PARK7	0.725527	2.062268e-18	3.573291e-14	3.573291e-14
2	8069998	8049784	NM_002712	PPP1R7	0.714525	1.139507e-17	1.974424e-13	9.872122e-14
3	8069998	7977657	NM_031314	HNRNPC	0.707124	3.441968e-17	5.963898e-13	1.987966e-13
4	8069998	7965855	NM_024057	NUP37	0.703858	5.545060e-17	9.607925e-13	2.401981e-13
5	8069998	7993872	NM_003366	UQCRC2	0.702763	6.497915e-17	1.125894e-12	2.251788e-13
6	8069998	8140828	NM_003130	SRI	0.699910	9.785720e-17	1.695572e-12	2.825953e-13
7	8069998	7928752	NM_014394	GHITM	0.698699	1.162715e-16	2.014637e-12	2.878052e-13
8	8069998	8009227	NM_002805	PSMC5	0.698268	1.236049e-16	2.141702e-12	2.677128e-13
9	8069998	7983606	NM_014335	EID1	0.696600	1.564401e-16	2.710637e-12	3.011819e-13
10	8069998	8077781	NM_000551	VHL	0.695635	1.791556e-16	3.104229e-12	3.104229e-13
11	8069998	7918813	NM_002524	NRAS	0.692480	2.780346e-16	4.817506e-12	4.379551e-13
12	8069998	7959597	NM_006815	TMED2	0.691071	3.377347e-16	5.851930e-12	4.876608e-13
13	8069998	8042720	NM_006429	CCT7	0.690280	3.765079e-16	6.523752e-12	5.018271e-13
14	8069998	7959282	NM_194271	RNF34	0.688243	4.973504e-16	8.617590e-12	6.155421e-13
15	8069998	8077770	NM_018462	C3orf10	0.688130	5.050779e-16	8.751484e-12	5.834323e-13
16	8069998	7936871	NM_000274	OAT	0.685824	6.901920e-16	1.195896e-11	7.474348e-13
17	8069998	8042259	NM_005917	MDH1	0.685383	7.323700e-16	1.268977e-11	7.464573e-13
18	8069998	7990566	NM_000126	ETFA	0.685023	7.686989e-16	1.331925e-11	7.399581e-13
19	8069998	8122705	NM_005389	PCMT1	0.684316	8.452195e-16	1.464512e-11	7.707957e-13
20	8069998	8073242	NM_000026	ADSL	0.684273	8.501068e-16	1.472980e-11	7.364900e-13
21	8069998	7915758	NM_021639	GPBP1L1	0.684174	8.614437e-16	1.492623e-11	7.107731e-13
22	8069998	7978833	NM_001001	RPL36AL	0.680983	1.317058e-15	2.282066e-11	1.037303e-12
23	8069998	8001185	NM_005880	DNAJA2	0.680749	1.358439e-15	2.353767e-11	1.023377e-12
24	8069998	7975976	NM_012111	AHSA1	0.679061	1.696321e-15	2.939216e-11	1.224673e-12
25	8069998	8139421	NM_012412	H2AFV	0.678536	1.817239e-15	3.148729e-11	1.259492e-12
26	8069998	8150818	NM_006756	TCEA1	0.678408	1.847894e-15	3.201846e-11	1.231479e-12
27	8069998	7936091	NM_032747	USMG5	0.676858	2.262087e-15	3.919519e-11	1.451674e-12
28	8069998	8090546	NM_001127192	CNBP	0.675578	2.670713e-15	4.627545e-11	1.652695e-12
29	8069998	8013094	NM_003653	COPS3	0.675495	2.699749e-15	4.677855e-11	1.613053e-12
30	8069998	7908766	NM_006335	TIMM17A	0.674053	3.251750e-15	5.634306e-11	1.878102e-12
31	8069998	8148270	NM_005005	NDUFB9	0.672606	3.915249e-15	6.783952e-11	2.188372e-12
32	8069998	8070655	NM_001025204	U2AF1	0.669211	6.027730e-15	1.044425e-10	3.263828e-12
33	8069998	7916372	NM_004872	TMEM59	0.666623	8.343852e-15	1.445739e-10	4.381028e-12
34	8069998	8135250	NM_002803	PSMC2	0.666488	8.485603e-15	1.470300e-10	4.324413e-12
35	8069998	8114628	NM_002109	HARS	0.666156	8.845559e-15	1.532670e-10	4.379057e-12
36	8069998	7978201	NM_006156	NEDD8	0.664188	1.129647e-14	1.957339e-10	5.437054e-12
37	8069998	8011875	NM_016041	DERL2	0.663395	1.246098e-14	2.159114e-10	5.835444e-12
38	8069998	8039068	NM_021074	NDUFV2	0.662097	1.462136e-14	2.533443e-10	6.666956e-12
39	8069998	8081348	NM_020357	PCNP	0.661849	1.507276e-14	2.611657e-10	6.696556e-12
40	8069998	7978570	NM_021249	SNX6	0.660987	1.675323e-14	2.902832e-10	7.257079e-12
41	8069998	8048195	NM_000998	RPL37A	0.660905	1.692229e-14	2.932125e-10	7.151524e-12
42	8069998	7906662	NM_016406	UFC1	0.660602	1.756052e-14	3.042712e-10	7.244552e-12
43	8069998	8016868			-0.660299	1.822366e-14	3.157614e-10	7.343289e-12
44	8069998	8132580	NM_006555	YKT6	0.660129	1.860437e-14	3.223579e-10	7.326316e-12
45	8069998	7966332	NM_016226	VPS29	0.659313	2.054823e-14	3.560391e-10	7.911981e-12
46	8069998	8067382	NM_002792	PSMA7	0.659290	2.060538e-14	3.570295e-10	7.761510e-12
47	8069998	8020058	NM_021074	NDUFV2	0.659108	2.106635e-14	3.650167e-10	7.766313e-12
48	8069998	7899737	NM_003757	EIF3I	0.658597	2.241516e-14	3.883875e-10	8.091406e-12
49	8069998	7957052	NM_006431	CCT2	0.658534	2.258643e-14	3.913551e-10	7.986840e-12
50	8069998	7979864	NM_004450	ERH	0.657650	2.513558e-14	4.355241e-10	8.710483e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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