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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 11242.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
11242 8178377 NM_003587 DHX16 link to infopage DEAH (Asp-Glu-Ala-His) box polypeptide 16

Fetching correlation data, please wait...
Getting list of correlations for id 11242.
Getting list of p-values for id 11242.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.098 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8178377 8124775 NM_003587 DHX16 link to infopage 0.985439 4.410753e-81 7.642512e-77 7.642512e-77
2 8178377 7985099 NM_003978 PSTPIP1 link to infopage 0.709880 2.289651e-17 3.967279e-13 1.983639e-13
3 8178377 8013191 NM_002018 FLII link to infopage 0.709083 2.577509e-17 4.466050e-13 1.488683e-13
4 8178377 7921752 NM_001025598 ARHGAP30 link to infopage 0.706162 3.963509e-17 6.867572e-13 1.716893e-13
5 8178377 7994659 NM_017458 MVP link to infopage 0.674474 3.080285e-15 5.337209e-11 1.067442e-11
6 8178377 8153819 NM_138496 CYHR1 link to infopage 0.673961 3.290345e-15 5.701181e-11 9.501969e-12
7 8178377 7963721 NM_020898 CALCOCO1 link to infopage 0.673135 3.658498e-15 6.339079e-11 9.055827e-12
8 8178377 7967841 NM_001161344 CHFR link to infopage 0.667047 7.912914e-15 1.371071e-10 1.713838e-11
9 8178377 7956443 NM_004990 MARS link to infopage 0.663494 1.230970e-14 2.132902e-10 2.369892e-11
10 8178377 8077550 NM_001077525 MTMR14 link to infopage 0.663048 1.300577e-14 2.253509e-10 2.253509e-11
11 8178377 8026638 NM_004145 MYO9B link to infopage 0.658263 2.334042e-14 4.044195e-10 3.676541e-11
12 8178377 8009183 NM_203351 MAP3K3 link to infopage 0.654331 3.744309e-14 6.487764e-10 5.406470e-11
13 8178377 7934477 NM_172171 CAMK2G link to infopage 0.654056 3.869135e-14 6.704050e-10 5.156962e-11
14 8178377 8170891 NM_001493 GDI1 link to infopage 0.653614 4.078351e-14 7.066559e-10 5.047542e-11
15 8178377 7928369 NM_004922 SEC24C link to infopage 0.652399 4.711175e-14 8.163054e-10 5.442036e-11
16 8178377 8036710 NM_004877 GMFG link to infopage 0.645787 1.021220e-13 1.769468e-9 1.105918e-10
17 8178377 8009932 NM_013260 SAP30BP link to infopage 0.645494 1.056449e-13 1.830510e-9 1.076771e-10
18 8178377 8016980 hsa-mir-142 link to infopage 0.641105 1.746380e-13 3.025953e-9 1.681085e-10
19 8178377 7950197 NM_015242 ARAP1 link to infopage 0.641033 1.760743e-13 3.050840e-9 1.605705e-10
20 8178377 7941478 NM_005146 SART1 link to infopage 0.636496 2.935130e-13 5.085699e-9 2.542850e-10
21 8178377 8104201 NM_007277 EXOC3 link to infopage 0.634268 3.760920e-13 6.516546e-9 3.103117e-10
22 8178377 7998033 NM_014972 TCF25 link to infopage 0.631982 4.840066e-13 8.386383e-9 3.811992e-10
23 8178377 8004030 NM_015528 RNF167 link to infopage 0.630313 5.811267e-13 1.006918e-8 4.377905e-10
24 8178377 8125360 NM_002586 PBX2 link to infopage 0.629810 6.139362e-13 1.063767e-8 4.432363e-10
25 8178377 8015955 NM_020218 ATXN7L3 link to infopage 0.628331 7.210406e-13 1.249347e-8 4.997388e-10
26 8178377 8072744 NM_013416 NCF4 link to infopage 0.627397 7.977460e-13 1.382254e-8 5.316363e-10
27 8178377 7920877 NM_004723 ARHGEF2 link to infopage 0.626903 8.414572e-13 1.457993e-8 5.399973e-10
28 8178377 8132539 NM_014063 DBNL link to infopage 0.625996 9.278087e-13 1.607614e-8 5.741479e-10
29 8178377 7936028 NM_005736 ACTR1A link to infopage 0.625771 9.505357e-13 1.646993e-8 5.679287e-10
30 8178377 7914530 NM_001143888 BSDC1 link to infopage 0.625756 9.520679e-13 1.649648e-8 5.498827e-10
31 8178377 7996725 NM_017803 DUS2L link to infopage 0.624080 1.139403e-12 1.974244e-8 6.368528e-10
32 8178377 7956593 NM_006812 OS9 link to infopage 0.623808 1.172924e-12 2.032325e-8 6.351015e-10
33 8178377 8161056 NM_006289 TLN1 link to infopage 0.623734 1.182261e-12 2.048503e-8 6.207586e-10
34 8178377 8126066 NM_014341 MTCH1 link to infopage 0.623396 1.225651e-12 2.123685e-8 6.246131e-10
35 8178377 7899192 NM_002953 RPS6KA1 link to infopage 0.623352 1.231348e-12 2.133557e-8 6.095877e-10
36 8178377 8075728 NM_002473 MYH9 link to infopage 0.621803 1.451670e-12 2.515308e-8 6.986966e-10
37 8178377 7905028 CR541728 LSP1 link to infopage 0.621110 1.562044e-12 2.706553e-8 7.315008e-10
38 8178377 8042917 NM_001381 DOK1 link to infopage 0.620753 1.622148e-12 2.810696e-8 7.396569e-10
39 8178377 8087473 NM_153273 IP6K1 link to infopage 0.620667 1.636923e-12 2.836296e-8 7.272553e-10
40 8178377 8064208 NM_025219 DNAJC5 link to infopage 0.620260 1.708681e-12 2.960632e-8 7.401580e-10
41 8178377 8044584 NM_012455 PSD4 link to infopage 0.620075 1.742277e-12 3.018844e-8 7.363034e-10
42 8178377 7964203 NM_013449 BAZ2A link to infopage 0.619430 1.864727e-12 3.231013e-8 7.692888e-10
43 8178377 7914904 NM_032017 STK40 link to infopage 0.618531 2.049007e-12 3.550315e-8 8.256546e-10
44 8178377 7995055 NM_182958 MYST1 link to infopage 0.617636 2.250080e-12 3.898714e-8 8.860714e-10
45 8178377 8176282 NM_001029891 PGAM4 link to infopage 0.616916 2.425509e-12 4.202679e-8 9.339286e-10
46 8178377 8173729 NM_001029891 PGAM4 link to infopage 0.616916 2.425509e-12 4.202679e-8 9.136258e-10
47 8178377 8027074 NM_002911 UPF1 link to infopage 0.615511 2.806631e-12 4.863050e-8 1.034692e-9
48 8178377 8080487 NM_006254 PRKCD link to infopage 0.613452 3.471153e-12 6.014468e-8 1.253014e-9
49 8178377 8132646 NM_031443 CCM2 link to infopage 0.613164 3.575596e-12 6.195435e-8 1.264374e-9
50 8178377 8089911 NM_005335 HCLS1 link to infopage 0.612447 3.848560e-12 6.668400e-8 1.333680e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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