[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4787	7995456	NM_182922	HEATR3		HEAT repeat containing 3

Fetching correlation data, please wait...
Getting list of correlations for id 4787.
Getting list of p-values for id 4787.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.174 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7995456	8077781	NM_000551	VHL	0.566334	3.041395e-10	5.269825e-6	5.269825e-6
2	7995456	8053890	NM_020151	STARD7	0.563968	3.738412e-10	6.477547e-6	3.238774e-6
3	7995456	7958644	NM_170665	ATP2A2	0.562559	4.223910e-10	7.318768e-6	2.439589e-6
4	7995456	7930996	NM_018117	WDR11	0.547184	1.543544e-9	2.674499e-5	6.686248e-6
5	7995456	7908328	ENST00000362941		-0.541368	2.478015e-9	4.293656e-5	8.587312e-6
6	7995456	8072015	NM_005160	ADRBK2	0.536313	3.712220e-9	6.432164e-5	1.072027e-5
7	7995456	7907024	NM_017542	POGK	0.533904	4.490271e-9	7.780293e-5	1.111470e-5
8	7995456	8086482	NM_181489	ZNF445	0.533107	4.780455e-9	8.283094e-5	1.035387e-5
9	7995456	8062409	NM_030877	CTNNBL1	0.530157	6.018999e-9	1.042912e-4	1.158791e-5
10	7995456	8054930	NM_032390	MKI67IP	0.529812	6.182493e-9	1.071241e-4	1.071241e-5
11	7995456	8150112	NM_000637	GSR	0.524531	9.283373e-9	1.608530e-4	1.462300e-5
12	7995456	8017210	NM_003916	AP1S2	0.519632	1.345287e-8	2.330980e-4	1.942483e-5
13	7995456	8163383	NM_022486	SUSD1	0.519009	1.409692e-8	2.442573e-4	1.878902e-5
14	7995456	8116734	NM_004271	LY86	0.518392	1.476324e-8	2.558026e-4	1.827162e-5
15	7995456	8140468	NM_017439	PION	0.517554	1.571733e-8	2.723342e-4	1.815562e-5
16	7995456	8113504	NM_004772	C5orf13	0.517012	1.636525e-8	2.835607e-4	1.772254e-5
17	7995456	8106252	NM_000521	HEXB	0.513893	2.062259e-8	3.573277e-4	2.101928e-5
18	7995456	7955441	NM_014033	METTL7A	0.513480	2.125953e-8	3.683638e-4	2.046466e-5
19	7995456	7984319	NM_002755	MAP2K1	0.512587	2.270286e-8	3.933725e-4	2.070382e-5
20	7995456	7990211	NM_000520	HEXA	0.510015	2.740103e-8	4.747777e-4	2.373888e-5
21	7995456	8083119	NM_014245	RNF7	0.509897	2.763649e-8	4.788574e-4	2.280273e-5
22	7995456	7975747	NM_001933	DLST	0.508166	3.133813e-8	5.429958e-4	2.468163e-5
23	7995456	8034420	NM_000528	MAN2B1	0.507797	3.218667e-8	5.576984e-4	2.424776e-5
24	7995456	8056545	NM_013233	STK39	0.507369	3.319673e-8	5.751997e-4	2.396666e-5
25	7995456	8158714	NM_014285	EXOSC2	0.507301	3.336025e-8	5.780330e-4	2.312132e-5
26	7995456	7907445	NM_014458	KLHL20	0.504966	3.946079e-8	6.837371e-4	2.629758e-5
27	7995456	8073192	NM_006003	UQCRFS1	0.504405	4.108059e-8	7.118034e-4	2.636309e-5
28	7995456	8079392	NM_001123396	CCR2	0.503715	4.315649e-8	7.477724e-4	2.670616e-5
29	7995456	8021357	NM_004852	ONECUT2	-0.503682	4.325874e-8	7.495441e-4	2.584635e-5
30	7995456	8103508	NM_017923	MARCH1	0.503635	4.340354e-8	7.520532e-4	2.506844e-5
31	7995456	8053763	NM_031902	MRPS5	0.502764	4.618230e-8	8.002007e-4	2.581292e-5
32	7995456	8133434	NM_022170	EIF4H	0.502415	4.734202e-8	8.202952e-4	2.563422e-5
33	7995456	8016099	NM_004247	EFTUD2	0.500409	5.457294e-8	9.455854e-4	2.865410e-5
34	7995456	8104449	NM_012073	CCT5	0.499792	5.699974e-8	9.876346e-4	2.904808e-5
35	7995456	8145636	NM_024567	HMBOX1	0.499304	5.899517e-8	1.022209e-3	2.920598e-5
36	7995456	8008646	NM_021626	SCPEP1	0.498096	6.421707e-8	1.112689e-3	3.090803e-5
37	7995456	7899265	NM_006142	SFN	-0.497935	6.494477e-8	1.125298e-3	3.041346e-5
38	7995456	8015323	NM_153490	KRT13	-0.497076	6.897162e-8	1.195071e-3	3.144925e-5
39	7995456	7908766	NM_006335	TIMM17A	0.496966	6.950386e-8	1.204293e-3	3.087932e-5
40	7995456	8013696	NM_014680	KIAA0100	0.496206	7.328453e-8	1.269801e-3	3.174503e-5
41	7995456	8171111	NM_001636	SLC25A6	0.496073	7.396830e-8	1.281649e-3	3.125972e-5
42	7995456	8177003	NM_001636	SLC25A6	0.496073	7.396830e-8	1.281649e-3	3.051545e-5
43	7995456	8146171	NM_001556	IKBKB	0.495638	7.624492e-8	1.321096e-3	3.072316e-5
44	7995456	8086057	NM_014517	UBP1	0.494816	8.072146e-8	1.398661e-3	3.178774e-5
45	7995456	8082003	NM_018456	EAF2	0.494055	8.509480e-8	1.474438e-3	3.276528e-5
46	7995456	8150126	NM_001009552	PPP2CB	0.493812	8.653642e-8	1.499417e-3	3.259601e-5
47	7995456	8090840	NM_001005861	RYK	0.493631	8.762504e-8	1.518279e-3	3.230381e-5
48	7995456	8019250	NM_000918	P4HB	0.493338	8.941511e-8	1.549296e-3	3.227699e-5
49	7995456	8037732	NM_001029861	NANOS2	-0.492588	9.416213e-8	1.631547e-3	3.329688e-5
50	7995456	7954752	NM_012062	DNM1L	0.491884	9.883436e-8	1.712503e-3	3.425006e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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