[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2957	7919197	NM_032305	POLR3GL		polymerase (RNA) III (DNA directed) polypeptide G (32kD)-like

Fetching correlation data, please wait...
Getting list of correlations for id 2957.
Getting list of p-values for id 2957.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7919197	8042207	NM_152516	COMMD1	0.717553	7.177135e-18	1.243582e-13	1.243582e-13
2	7919197	8086530	NM_015444	TMEM158	-0.716234	8.784972e-18	1.522172e-13	7.610861e-14
3	7919197	7950644	NM_004549	NDUFC2	0.707451	3.279984e-17	5.683228e-13	1.894409e-13
4	7919197	8028514	NM_013234	EIF3K	0.704742	4.877284e-17	8.450870e-13	2.112718e-13
5	7919197	8097679	NM_007080	LSM6	0.704367	5.150021e-17	8.923441e-13	1.784688e-13
6	7919197	8164067	NM_002799	PSMB7	0.703879	5.528841e-17	9.579823e-13	1.596637e-13
7	7919197	8136631	NM_003143	SSBP1	0.703572	5.780537e-17	1.001594e-12	1.430848e-13
8	7919197	7975645	NM_021188	ZNF410	0.700359	9.178811e-17	1.590413e-12	1.988016e-13
9	7919197	8042259	NM_005917	MDH1	0.699621	1.019712e-16	1.766855e-12	1.963172e-13
10	7919197	8172358	NM_153477	UXT	0.698508	1.194619e-16	2.069916e-12	2.069916e-13
11	7919197	7989315	NM_004492	GTF2A2	0.697589	1.360673e-16	2.357637e-12	2.143307e-13
12	7919197	7911559	NM_017971	MRPL20	0.697559	1.366472e-16	2.367686e-12	1.973072e-13
13	7919197	8039939	NM_017971	MRPL20	0.697559	1.366472e-16	2.367686e-12	1.821297e-13
14	7919197	7922870	NM_030934	C1orf25	0.696464	1.594610e-16	2.762981e-12	1.973558e-13
15	7919197	8148674	NM_139021	MAPK15	-0.695120	1.925419e-16	3.336174e-12	2.224116e-13
16	7919197	8092265	NM_020409	MRPL47	0.694953	1.970975e-16	3.415108e-12	2.134443e-13
17	7919197	8144894	NM_018142	INTS10	0.687453	5.537490e-16	9.594809e-12	5.644005e-13
18	7919197	8052562	NM_006430	CCT4	0.687298	5.654788e-16	9.798052e-12	5.443362e-13
19	7919197	8067978	NM_021130	PPIA	0.686785	6.061585e-16	1.050291e-11	5.527847e-13
20	7919197	7923007	NM_015984	UCHL5	0.686270	6.498399e-16	1.125978e-11	5.629888e-13
21	7919197	8069541	NM_022136	SAMSN1	0.684322	8.444926e-16	1.463252e-11	6.967868e-13
22	7919197	7996022	NM_002990	CCL22	-0.684173	8.614831e-16	1.492692e-11	6.784963e-13
23	7919197	8000323	NM_005003	NDUFAB1	0.683884	8.954776e-16	1.551594e-11	6.746061e-13
24	7919197	7944375	NM_016146	TRAPPC4	0.681566	1.219184e-15	2.112480e-11	8.801999e-13
25	7919197	8128716	NM_006016	CD164	0.681358	1.253253e-15	2.171512e-11	8.686048e-13
26	7919197	8017621	NM_007215	POLG2	0.681280	1.266309e-15	2.194134e-11	8.438977e-13
27	7919197	7962869	NM_004818	DDX23	0.680412	1.420240e-15	2.460849e-11	9.114257e-13
28	7919197	8075585	NM_014306	C22orf28	0.679689	1.561984e-15	2.706450e-11	9.665894e-13
29	7919197	7960553	NM_016497	MRPL51	0.679420	1.618220e-15	2.803890e-11	9.668587e-13
30	7919197	7916493	NM_003713	PPAP2B	-0.679220	1.661442e-15	2.878781e-11	9.595936e-13
31	7919197	7967149	NM_016237	ANAPC5	0.677877	1.980756e-15	3.432055e-11	1.107115e-12
32	7919197	8001185	NM_005880	DNAJA2	0.677232	2.154681e-15	3.733416e-11	1.166693e-12
33	7919197	8152648	BC067796	C8orf76	0.675924	2.553842e-15	4.425042e-11	1.340922e-12
34	7919197	8015712	NM_001040431	CCDC56	0.675208	2.801855e-15	4.854775e-11	1.427875e-12
35	7919197	7906662	NM_016406	UFC1	0.674890	2.919453e-15	5.058536e-11	1.445296e-12
36	7919197	7975976	NM_012111	AHSA1	0.674346	3.131560e-15	5.426054e-11	1.507237e-12
37	7919197	8004497	NM_001416	EIF4A1	0.673984	3.280701e-15	5.684471e-11	1.536344e-12
38	7919197	8167652	AY730278	CENPVL1	-0.672479	3.979512e-15	6.895300e-11	1.814553e-12
39	7919197	8172715	AY730278	CENPVL1	-0.672479	3.979512e-15	6.895300e-11	1.768026e-12
40	7919197	7965855	NM_024057	NUP37	0.672469	3.984505e-15	6.903951e-11	1.725988e-12
41	7919197	7920317	NM_004515	ILF2	0.671982	4.240187e-15	7.346971e-11	1.791944e-12
42	7919197	8089034	NM_031905	ARMC10	0.671660	4.417997e-15	7.655064e-11	1.822634e-12
43	7919197	8073343	CR605850		0.671008	4.800441e-15	8.317725e-11	1.934355e-12
44	7919197	7929116	NM_006413	RPP30	0.670673	5.008802e-15	8.678751e-11	1.972443e-12
45	7919197	8135235	NM_004279	PMPCB	0.670533	5.098875e-15	8.834821e-11	1.963294e-12
46	7919197	8074384	NM_005315	GSC2	-0.670017	5.443786e-15	9.432448e-11	2.050532e-12
47	7919197	7912670	NM_006004	UQCRH	0.669737	5.639818e-15	9.772112e-11	2.079173e-12
48	7919197	8002218	NM_024939	ESRP2	-0.669698	5.667981e-15	9.820912e-11	2.046023e-12
49	7919197	8101945	NM_002106	H2AFZ	0.669416	5.873955e-15	1.017780e-10	2.077102e-12
50	7919197	7918345	NM_002790	PSMA5	0.668492	6.599325e-15	1.143465e-10	2.286930e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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