[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 10381.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
10381	8178917	NM_022553	VPS52		vacuolar protein sorting 52 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 10381.
Getting list of p-values for id 10381.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8178917	8125649	NM_022553	VPS52	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8178917	8180123	NM_022553	VPS52	0.986283	2.084254e-82	3.611387e-78	1.805694e-78
3	8178917	8053909	NM_014014	SNRNP200	0.803978	5.452034e-25	9.446740e-21	3.148913e-21
4	8178917	8093685	NM_002111	HTT	0.791718	8.860003e-24	1.535173e-19	3.837932e-20
5	8178917	8172914	NM_031407	HUWE1	0.789645	1.393475e-23	2.414475e-19	4.828949e-20
6	8178917	7928369	NM_004922	SEC24C	0.774835	3.076020e-22	5.329821e-18	8.883034e-19
7	8178917	8051075	NM_001521	GTF3C2	0.751946	2.374623e-20	4.114509e-16	5.877870e-17
8	8178917	7905700	NM_014847	UBAP2L	0.750056	3.328538e-20	5.767357e-16	7.209197e-17
9	8178917	8133610	NM_001013739	STAG3L3	0.748308	4.537602e-20	7.862304e-16	8.735893e-17
10	8178917	7972946	NM_007368	RASA3	0.747556	5.179792e-20	8.975026e-16	8.975026e-17
11	8178917	7939767	NM_003682	MADD	0.745917	6.902411e-20	1.195981e-15	1.087255e-16
12	8178917	8005903	NM_003170	SUPT6H	0.745069	8.000281e-20	1.386209e-15	1.155174e-16
13	8178917	7955908	NM_005337	NCKAP1L	0.741411	1.502882e-19	2.604043e-15	2.003110e-16
14	8178917	7925851	NM_014023	WDR37	0.737937	2.708288e-19	4.692651e-15	3.351893e-16
15	8178917	7963244	NM_005653	TFCP2	0.736900	3.223027e-19	5.584539e-15	3.723026e-16
16	8178917	7920810	NM_001037533	GON4L	0.736355	3.530473e-19	6.117250e-15	3.823281e-16
17	8178917	8018922	NM_004762	CYTH1	0.735361	4.166518e-19	7.219326e-15	4.246662e-16
18	8178917	8139977	NM_001013739	STAG3L3	0.735092	4.357015e-19	7.549399e-15	4.194111e-16
19	8178917	7995069	NM_004960	FUS	0.734749	4.612102e-19	7.991390e-15	4.205995e-16
20	8178917	8013696	NM_014680	KIAA0100	0.733761	5.430818e-19	9.409979e-15	4.704989e-16
21	8178917	8140196	NM_001025202	STAG3L2	0.731347	8.072395e-19	1.398704e-14	6.660494e-16
22	8178917	8002729	NR_027264	GLG1	0.728686	1.243273e-18	2.154220e-14	9.791908e-16
23	8178917	8011141	NM_006445	PRPF8	0.726425	1.787383e-18	3.096999e-14	1.346521e-15
24	8178917	7912412	NM_004958	MTOR	0.726108	1.880011e-18	3.257495e-14	1.357290e-15
25	8178917	7981032	NM_020414	DDX24	0.725959	1.925206e-18	3.335805e-14	1.334322e-15
26	8178917	7947894	NM_198700	CELF1	0.724606	2.387077e-18	4.136088e-14	1.590803e-15
27	8178917	8024238	NM_001280	CIRBP	0.724551	2.407929e-18	4.172219e-14	1.545266e-15
28	8178917	8163023	NM_003640	IKBKAP	0.722052	3.570154e-18	6.186006e-14	2.209288e-15
29	8178917	7976876	NM_001376	DYNC1H1	0.720432	4.597889e-18	7.966763e-14	2.747160e-15
30	8178917	7913001	NM_020765	UBR4	0.719262	5.513904e-18	9.553941e-14	3.184647e-15
31	8178917	8082478	NM_016128	COPG	0.718161	6.535686e-18	1.132438e-13	3.653027e-15
32	8178917	7959927	NM_004592	SFRS8	0.718152	6.544878e-18	1.134031e-13	3.543847e-15
33	8178917	7990211	NM_000520	HEXA	0.718061	6.637457e-18	1.150072e-13	3.485067e-15
34	8178917	8101324	NM_031370	HNRNPD	0.717572	7.155468e-18	1.239828e-13	3.646553e-15
35	8178917	7948696	NM_004739	MTA2	0.716581	8.330281e-18	1.443388e-13	4.123965e-15
36	8178917	8068974	NM_003274	TRAPPC10	0.716269	8.737794e-18	1.513998e-13	4.205549e-15
37	8178917	7903619	NM_006513	SARS	0.713745	1.282489e-17	2.222168e-13	6.005860e-15
38	8178917	8006392	NM_002815	PSMD11	0.712981	1.439181e-17	2.493669e-13	6.562287e-15
39	8178917	8063242	NM_006420	ARFGEF2	0.712720	1.497020e-17	2.593887e-13	6.650993e-15
40	8178917	8130505	NM_003379	EZR	0.712162	1.628019e-17	2.820869e-13	7.052171e-15
41	8178917	7998174	NM_018032	LUC7L	0.711234	1.871031e-17	3.241935e-13	7.907159e-15
42	8178917	8064351	NM_177559	CSNK2A1	0.710943	1.954110e-17	3.385886e-13	8.061634e-15
43	8178917	8007715	NM_021079	NMT1	0.710024	2.241006e-17	3.882992e-13	9.030213e-15
44	8178917	7952557	NM_003139	SRPR	0.709722	2.344190e-17	4.061778e-13	9.231314e-15
45	8178917	8146171	NM_001556	IKBKB	0.709466	2.435112e-17	4.219319e-13	9.376264e-15
46	8178917	8154059	NM_003070	SMARCA2	0.708509	2.805835e-17	4.861671e-13	1.056885e-14
47	8178917	7987584	NM_017553	INO80	0.708051	3.002692e-17	5.202765e-13	1.106971e-14
48	8178917	8059708	NR_002921	SNORA75	0.707985	3.031834e-17	5.253259e-13	1.094429e-14
49	8178917	7947694	NM_001008938	CKAP5	0.707539	3.238021e-17	5.610518e-13	1.145004e-14
50	8178917	8164177	NM_001006617	MAPKAP1	0.707440	3.285506e-17	5.692797e-13	1.138559e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation