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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 9340.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
9340 8019737 NM_002266 KPNA2 link to infopage karyopherin alpha 2 (RAG cohort 1, importin alpha 1)

Fetching correlation data, please wait...
Getting list of correlations for id 9340.
Getting list of p-values for id 9340.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8019737 8009417 NM_002266 KPNA2 link to infopage 0.989340 5.149735e-88 8.922946e-84 8.922946e-84
2 8019737 8050278 NM_005742 PDIA6 link to infopage 0.797270 2.566584e-24 4.447119e-20 2.223560e-20
3 8019737 8152628 NM_024295 DERL1 link to infopage 0.779685 1.146541e-22 1.986612e-18 6.622041e-19
4 8019737 7904881 NR_002305 PDIA3P link to infopage 0.775810 2.527396e-22 4.379219e-18 1.094805e-18
5 8019737 7983274 NM_005313 PDIA3 link to infopage 0.775054 2.943237e-22 5.099747e-18 1.019949e-18
6 8019737 8006392 NM_002815 PSMD11 link to infopage 0.767325 1.352277e-21 2.343090e-17 3.905151e-18
7 8019737 8108015 NM_002154 HSPA4 link to infopage 0.763132 3.017719e-21 5.228802e-17 7.469718e-18
8 8019737 8101043 NM_203505 G3BP2 link to infopage 0.759922 5.518212e-21 9.561406e-17 1.195176e-17
9 8019737 8146216 NM_001135694 VDAC3 link to infopage 0.759834 5.609536e-21 9.719644e-17 1.079960e-17
10 8019737 7918345 NM_002790 PSMA5 link to infopage 0.758392 7.332455e-21 1.270494e-16 1.270494e-17
11 8019737 8018315 NM_006937 SUMO2 link to infopage 0.758244 7.536679e-21 1.305880e-16 1.187164e-17
12 8019737 7920317 NM_004515 ILF2 link to infopage 0.756199 1.098071e-20 1.902628e-16 1.585523e-17
13 8019737 8071547 NM_198157 UBE2L3 link to infopage 0.755777 1.186331e-20 2.055555e-16 1.581196e-17
14 8019737 7938777 NM_005566 LDHA link to infopage 0.753331 1.850369e-20 3.206135e-16 2.290096e-17
15 8019737 8174636 NM_006937 SUMO2 link to infopage 0.752955 1.980521e-20 3.431648e-16 2.287765e-17
16 8019737 8087951 NM_018165 PBRM1 link to infopage 0.752533 2.136951e-20 3.702694e-16 2.314184e-17
17 8019737 8178322 NM_006937 SUMO2 link to infopage 0.752028 2.339975e-20 4.054475e-16 2.384985e-17
18 8019737 7973902 NM_003136 SRP54 link to infopage 0.750354 3.156841e-20 5.469858e-16 3.038810e-17
19 8019737 7947934 NM_014342 MTCH2 link to infopage 0.748978 4.030312e-20 6.983321e-16 3.675432e-17
20 8019737 8018600 NM_014230 SRP68 link to infopage 0.748125 4.686399e-20 8.120123e-16 4.060062e-17
21 8019737 7989253 NM_024755 SLTM link to infopage 0.747634 5.108971e-20 8.852313e-16 4.215387e-17
22 8019737 8055060 NM_018383 WDR33 link to infopage 0.746463 6.274544e-20 1.087190e-15 4.941773e-17
23 8019737 7903619 NM_006513 SARS link to infopage 0.746004 6.798245e-20 1.177932e-15 5.121443e-17
24 8019737 8043861 NM_015904 EIF5B link to infopage 0.745401 7.551943e-20 1.308525e-15 5.452188e-17
25 8019737 8105153 NM_012343 NNT link to infopage 0.745095 7.964282e-20 1.379971e-15 5.519885e-17
26 8019737 7957106 NM_014515 CNOT2 link to infopage 0.744410 8.970221e-20 1.554270e-15 5.977962e-17
27 8019737 8075130 NM_012399 PITPNB link to infopage 0.744300 9.142821e-20 1.584177e-15 5.867321e-17
28 8019737 8171516 NM_002893 RBBP7 link to infopage 0.744017 9.601888e-20 1.663719e-15 5.941854e-17
29 8019737 7922309 NM_003762 VAMP4 link to infopage 0.740648 1.711696e-19 2.965856e-15 1.022709e-16
30 8019737 8039947 NM_006625 SRSF10 link to infopage 0.740576 1.732887e-19 3.002573e-15 1.000858e-16
31 8019737 8150797 NM_015941 ATP6V1H link to infopage 0.739960 1.924241e-19 3.334132e-15 1.075526e-16
32 8019737 7970864 NM_006644 HSPH1 link to infopage 0.739934 1.932737e-19 3.348854e-15 1.046517e-16
33 8019737 8062349 NM_002951 RPN2 link to infopage 0.739884 1.949070e-19 3.377153e-15 1.023380e-16
34 8019737 7985134 NM_005530 IDH3A link to infopage 0.739569 2.056146e-19 3.562685e-15 1.047849e-16
35 8019737 8064351 NM_177559 CSNK2A1 link to infopage 0.739510 2.076815e-19 3.598497e-15 1.028142e-16
36 8019737 8062174 NM_198398 ERGIC3 link to infopage 0.739428 2.105655e-19 3.648468e-15 1.013463e-16
37 8019737 8140814 NM_018843 SLC25A40 link to infopage 0.739410 2.112296e-19 3.659976e-15 9.891827e-17
38 8019737 8115765 NM_033644 FBXW11 link to infopage 0.739381 2.122629e-19 3.677880e-15 9.678631e-17
39 8019737 8117888 NM_006325 RAN link to infopage 0.739104 2.224327e-19 3.854091e-15 9.882285e-17
40 8019737 8015490 NM_003315 DNAJC7 link to infopage 0.739093 2.228799e-19 3.861840e-15 9.654600e-17
41 8019737 7931187 NM_004725 BUB3 link to infopage 0.739015 2.258283e-19 3.912928e-15 9.543726e-17
42 8019737 8147447 NM_014754 PTDSS1 link to infopage 0.738034 2.664396e-19 4.616599e-15 1.099190e-16
43 8019737 7939137 NM_006360 EIF3M link to infopage 0.737228 3.050580e-19 5.285740e-15 1.229242e-16
44 8019737 7934852 NM_005271 GLUD1 link to infopage 0.737125 3.103720e-19 5.377816e-15 1.222231e-16
45 8019737 8164177 NM_001006617 MAPKAP1 link to infopage 0.736823 3.265073e-19 5.657393e-15 1.257198e-16
46 8019737 8094704 NM_005339 UBE2K link to infopage 0.734461 4.837262e-19 8.381525e-15 1.822071e-16
47 8019737 8082940 NM_015396 ARMC8 link to infopage 0.733891 5.315548e-19 9.210249e-15 1.959628e-16
48 8019737 8045455 NM_014607 UBXN4 link to infopage 0.733066 6.089518e-19 1.055131e-14 2.198189e-16
49 8019737 7999520 NM_015659 RSL1D1 link to infopage 0.732769 6.394843e-19 1.108035e-14 2.261295e-16
50 8019737 8132943 NM_001762 CCT6A link to infopage 0.732716 6.450926e-19 1.117752e-14 2.235504e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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