[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 2315.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2315	8179559	NM_014260	PFDN6		prefoldin subunit 6

Fetching correlation data, please wait...
Getting list of correlations for id 2315.
Getting list of p-values for id 2315.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.084 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179559	8118661	NM_014260	PFDN6	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179559	8178270	NM_014260	PFDN6	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8179559	8034806	NM_005804	DDX39	0.624989	1.033749e-12	1.791176e-8	5.970587e-9
4	8179559	8028514	NM_013234	EIF3K	0.623374	1.228467e-12	2.128564e-8	5.321410e-9
5	8179559	8043100	NM_021103	TMSB10	0.616609	2.504221e-12	4.339063e-8	8.678127e-9
6	8179559	8115158	NM_001025071	RPS14	0.604175	8.876669e-12	1.538060e-7	2.563434e-8
7	8179559	7942586	NM_001005	RPS3	0.598027	1.626707e-11	2.818595e-7	4.026564e-8
8	8179559	7998655	NM_002952	RPS2	0.583513	6.467573e-11	1.120636e-6	1.400796e-7
9	8179559	7899737	NM_003757	EIF3I	0.579287	9.544693e-11	1.653809e-6	1.837566e-7
10	8179559	8015712	NM_001040431	CCDC56	0.578693	1.007661e-10	1.745974e-6	1.745974e-7
11	8179559	8061958	NM_176812	CHMP4B	0.577541	1.119150e-10	1.939152e-6	1.762865e-7
12	8179559	8013348	NM_002952	RPS2	0.573653	1.589908e-10	2.754833e-6	2.295694e-7
13	8179559	8157828	NM_030978	ARPC5L	0.573012	1.683962e-10	2.917802e-6	2.244463e-7
14	8179559	8165309	NM_003792	EDF1	0.569436	2.314916e-10	4.011056e-6	2.865040e-7
15	8179559	8027932	NM_001863	COX6B1	0.568275	2.564735e-10	4.443917e-6	2.962611e-7
16	8179559	8073343	CR605850		0.567835	2.666116e-10	4.619579e-6	2.887237e-7
17	8179559	8074969	NM_001355	DDT	0.564019	3.721691e-10	6.448574e-6	3.793279e-7
18	8179559	7991386	NM_006384	CIB1	0.563075	4.039351e-10	6.998983e-6	3.888324e-7
19	8179559	8131374	NM_006303	AIMP2	0.562002	4.431963e-10	7.679262e-6	4.041717e-7
20	8179559	7918050	NM_002295	RPSA	0.560709	4.953938e-10	8.583689e-6	4.291844e-7
21	8179559	8153449	NM_032378	EEF1D	0.559080	5.695822e-10	9.869151e-6	4.699596e-7
22	8179559	8078905	NM_002295	RPSA	0.557462	6.538300e-10	1.132891e-5	5.149505e-7
23	8179559	8067382	NM_002792	PSMA7	0.557101	6.742006e-10	1.168187e-5	5.079075e-7
24	8179559	7920271	NM_019554	S100A4	0.556667	6.994895e-10	1.212005e-5	5.050022e-7
25	8179559	8002133	NM_002801	PSMB10	0.555567	7.677428e-10	1.330268e-5	5.321072e-7
26	8179559	8036737	NM_001020	RPS16	0.554373	8.490513e-10	1.471151e-5	5.658274e-7
27	8179559	8066567	ENST00000447334		0.554100	8.686978e-10	1.505193e-5	5.574788e-7
28	8179559	8029129	NM_001022	RPS19	0.553449	9.175582e-10	1.589853e-5	5.678047e-7
29	8179559	8125835	NM_001014	RPS10	0.551848	1.049088e-9	1.817755e-5	6.268121e-7
30	8179559	8064502	NM_003091	SNRPB	0.551551	1.075390e-9	1.863329e-5	6.211096e-7
31	8179559	7939068	NM_001028	RPS25	0.550259	1.197378e-9	2.074697e-5	6.692571e-7
32	8179559	8089249	NM_000986	RPL24	0.549841	1.239581e-9	2.147822e-5	6.711944e-7
33	8179559	8164100	NM_007209	RPL35	0.548219	1.417472e-9	2.456054e-5	7.442588e-7
34	8179559	8172154	NM_002952	RPS2	0.547871	1.458722e-9	2.527528e-5	7.433905e-7
35	8179559	8038792	NM_001985	ETFB	0.545588	1.759249e-9	3.048251e-5	8.709288e-7
36	8179559	8026292	ENST00000430596		0.541445	2.462707e-9	4.267132e-5	1.185315e-6
37	8179559	8132646	NM_031443	CCM2	0.540907	2.571655e-9	4.455907e-5	1.204299e-6
38	8179559	8163525	NR_027261	POLE3	0.540768	2.600686e-9	4.506209e-5	1.185844e-6
39	8179559	8000323	NM_005003	NDUFAB1	0.539608	2.854622e-9	4.946203e-5	1.268257e-6
40	8179559	8104298	NM_004553	NDUFS6	0.536798	3.572135e-9	6.189439e-5	1.547360e-6
41	8179559	8025500	NM_024292	UBL5	0.536261	3.727616e-9	6.458841e-5	1.575327e-6
42	8179559	7952056	NM_000732	CD3D	0.535717	3.891781e-9	6.743288e-5	1.605545e-6
43	8179559	8029958	NM_015710	GLTSCR2	0.533877	4.499896e-9	7.796970e-5	1.813249e-6
44	8179559	8169085	NM_207318	FAM199X	0.531923	5.244765e-9	9.087605e-5	2.065365e-6
45	8179559	8122136	NM_001016	RPS12	0.530524	5.849612e-9	1.013562e-4	2.252360e-6
46	8179559	8063903	NM_001024	RPS21	0.529393	6.386584e-9	1.106603e-4	2.405660e-6
47	8179559	7900354	NM_006112	PPIE	0.529320	6.423100e-9	1.112930e-4	2.367937e-6
48	8179559	7963911	NM_001780	CD63	0.528799	6.687602e-9	1.158761e-4	2.414085e-6
49	8179559	8030437	NM_198319	PRMT1	0.528394	6.900166e-9	1.195592e-4	2.439983e-6
50	8179559	8041027	NM_004891	MRPL33	0.528205	7.001778e-9	1.213198e-4	2.426396e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation