Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7208	7929243	NM_017838	NHP2		NHP2 ribonucleoprotein homolog (yeast)
7913	8116168	NM_017838	NHP2		NHP2 ribonucleoprotein homolog (yeast)

Column legend:

• Rank: Row number sorted by strongest correlation
• Label1: Affymetrix probe set identifier(s) of the gene used in the search
• Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
• AccNum: The unique identifier for a sequence record [accessible at NCBI]
• GeneSym: Official gene symbol
• Info: Link to more information about the variable in the given row
• Pearson r: Pearson correlation coefficient
• Raw p: Unadjusted p-value
• Bonferroni: Bonferroni corrected p-value
• FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Info	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7929243	8015712	NM_001040431	CCDC56		0.822284	5.755790e-27	1.994611e-22	1.994611e-22
2	7929243	8028514	NM_013234	EIF3K		0.808550	1.832032e-25	6.348724e-21	3.174362e-21
3	7929243	8165309	NM_003792	EDF1		0.808533	1.839823e-25	6.375723e-21	2.125241e-21
4	7929243	7952056	NM_000732	CD3D		0.803031	6.809358e-25	2.359715e-20	5.899287e-21
5	7929243	8056966	ENST00000405359			0.799909	1.405169e-24	4.869473e-20	9.738946e-21
6	7929243	7912670	NM_006004	UQCRH		0.798775	1.822262e-24	6.314866e-20	1.052478e-20
7	7929243	7911559	NM_017971	MRPL20		0.789759	1.359433e-23	4.710979e-19	6.729969e-20
8	7929243	8039939	NM_017971	MRPL20		0.789759	1.359433e-23	4.710979e-19	5.888723e-20
9	7929243	8164100	NM_007209	RPL35		0.784692	4.029957e-23	1.396541e-18	1.551713e-19
10	7929243	8013348	NM_002952	RPS2		0.780491	9.705863e-23	3.363470e-18	3.363470e-19
11	7929243	7899737	NM_003757	EIF3I		0.777528	1.783721e-22	6.181306e-18	5.619369e-19
12	7929243	8172358	NM_153477	UXT		0.777445	1.814259e-22	6.287134e-18	5.239278e-19
13	7929243	8148270	NM_005005	NDUFB9		0.777239	1.891853e-22	6.556027e-18	5.043098e-19
14	7929243	8043100	NM_021103	TMSB10		0.775272	2.816955e-22	9.761877e-18	6.972769e-19
15	7929243	7913256	NM_005216	DDOST		0.773940	3.680833e-22	1.275556e-17	8.503706e-19
16	7929243	8000323	NM_005003	NDUFAB1		0.771824	5.606811e-22	1.942984e-17	1.214365e-18
17	7929243	8085026	NM_000996	RPL35A		0.768840	1.007643e-21	3.491886e-17	2.054051e-18
18	7929243	7998655	NM_002952	RPS2		0.767633	1.273984e-21	4.414863e-17	2.452702e-18
19	7929243	8073645	NM_015380	SAMM50		0.760684	4.786008e-21	1.658543e-16	8.729175e-18
20	7929243	8089249	NM_000986	RPL24		0.759812	5.632520e-21	1.951893e-16	9.759467e-18
21	7929243	8119648	NM_057161	KLHDC3		0.759517	5.950759e-21	2.062176e-16	9.819886e-18
22	7929243	8076209	NM_000967	RPL3		0.756635	1.013822e-20	3.513300e-16	1.596955e-17
23	7929243	8129095	ENST00000435100			0.750514	3.068066e-20	1.063208e-15	4.622641e-17
24	7929243	8036737	NM_001020	RPS16		0.750130	3.285249e-20	1.138470e-15	4.743626e-17
25	7929243	7950444	ENST00000428553			0.745103	7.953330e-20	2.756147e-15	1.102459e-16
26	7929243	8084945	ENST00000439929			0.743236	1.098718e-19	3.807499e-15	1.464423e-16
27	7929243	7918050	NM_002295	RPSA		0.741955	1.369311e-19	4.745211e-15	1.757486e-16
28	7929243	7949075	NM_016404	TRMT112		0.739634	2.033585e-19	7.047186e-15	2.516852e-16
29	7929243	8029129	NM_001022	RPS19		0.738836	2.327695e-19	8.066395e-15	2.781515e-16
30	7929243	8078905	NM_002295	RPSA		0.736417	3.494096e-19	1.210844e-14	4.036147e-16
31	7929243	8172154	NM_002952	RPS2		0.735965	3.768068e-19	1.305786e-14	4.212214e-16
32	7929243	8009227	NM_002805	PSMC5		0.733457	5.709743e-19	1.978654e-14	6.183294e-16
33	7929243	8110166	NM_138820	HIGD2A		0.732374	6.822726e-19	2.364347e-14	7.164689e-16
34	7929243	8070811	NM_006936	SUMO3		0.732308	6.897073e-19	2.390112e-14	7.029741e-16
35	7929243	8036777	NM_001436	FBL		0.731743	7.566045e-19	2.621937e-14	7.491249e-16
36	7929243	8019273	NM_005782	THOC4		0.730772	8.865624e-19	3.072293e-14	8.534148e-16
37	7929243	8049073				0.730183	9.755798e-19	3.380774e-14	9.137228e-16
38	7929243	8047635	NM_000976	RPL12		0.730013	1.002920e-18	3.475518e-14	9.146099e-16
39	7929243	8073343	CR605850			0.728844	1.211996e-18	4.200052e-14	1.076936e-15
40	7929243	8064502	NM_003091	SNRPB		0.728381	1.305967e-18	4.525698e-14	1.131424e-15
41	7929243	8032576	NM_198969	AES		0.728030	1.381716e-18	4.788200e-14	1.167854e-15
42	7929243	8141295	NM_004889	ATP5J2		0.727639	1.471342e-18	5.098787e-14	1.213997e-15
43	7929243	7948476	NM_014502	PRPF19		0.726103	1.881682e-18	6.520781e-14	1.516461e-15
44	7929243	7942586	NM_001005	RPS3		0.724543	2.411223e-18	8.355852e-14	1.899057e-15
45	7929243	8034806	NM_005804	DDX39		0.724246	2.527309e-18	8.758138e-14	1.946253e-15
46	7929243	8011850	NM_001212	C1QBP		0.724147	2.566905e-18	8.895351e-14	1.933772e-15
47	7929243	7948606	NM_014206	C11orf10		0.723760	2.728952e-18	9.456909e-14	2.012108e-15
48	7929243	8073192	NM_006003	UQCRFS1		0.723737	2.739044e-18	9.491883e-14	1.977476e-15
49	7929243	8042720	NM_006429	CCT7		0.723519	2.834667e-18	9.823256e-14	2.004746e-15
50	7929243	8125750	NM_000976	RPL12		0.722078	3.555730e-18	1.232203e-13	2.464405e-15

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.