[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7258	8060611	NM_033453	ITPA		inosine triphosphatase (nucleoside triphosphate pyrophosphatase)

Fetching correlation data, please wait...
Getting list of correlations for id 7258.
Getting list of p-values for id 7258.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8060611	7958819	NM_006817	ERP29	0.653231	4.268090e-14	7.395319e-10	7.395319e-10
2	8060611	8028514	NM_013234	EIF3K	0.634059	3.849105e-13	6.669344e-9	3.334672e-9
3	8060611	8164067	NM_002799	PSMB7	0.629776	6.162131e-13	1.067712e-8	3.559041e-9
4	8060611	8141133	NM_006304	SHFM1	0.625955	9.319274e-13	1.614751e-8	4.036877e-9
5	8060611	8058914	NM_001087	AAMP	0.621599	1.483336e-12	2.570176e-8	5.140351e-9
6	8060611	8153449	NM_032378	EEF1D	0.616964	2.413272e-12	4.181477e-8	6.969128e-9
7	8060611	8073343	CR605850		0.616600	2.506461e-12	4.342944e-8	6.204206e-9
8	8060611	7899737	NM_003757	EIF3I	0.606599	6.965936e-12	1.206988e-7	1.508735e-8
9	8060611	8042259	NM_005917	MDH1	0.601761	1.127724e-11	1.954008e-7	2.171120e-8
10	8060611	8167234	NM_006743	RBM3	0.601226	1.188934e-11	2.060067e-7	2.060067e-8
11	8060611	7967060	NM_003769	SRSF9	0.594763	2.232165e-11	3.867672e-7	3.516065e-8
12	8060611	8104298	NM_004553	NDUFS6	0.594265	2.341928e-11	4.057859e-7	3.381549e-8
13	8060611	7920903	NM_003145	SSR2	0.593501	2.520268e-11	4.366869e-7	3.359130e-8
14	8060611	8015712	NM_001040431	CCDC56	0.592846	2.683694e-11	4.650036e-7	3.321454e-8
15	8060611	8093156	NM_007362	NCBP2	0.592575	2.754171e-11	4.772151e-7	3.181434e-8
16	8060611	7914202	AY277594	SNHG12	0.590473	3.365242e-11	5.830954e-7	3.644346e-8
17	8060611	7906703	NM_004550	NDUFS2	0.588688	3.984771e-11	6.904413e-7	4.061419e-8
18	8060611	7950644	NM_004549	NDUFC2	0.587971	4.263624e-11	7.387582e-7	4.104212e-8
19	8060611	8072979	NM_021974	POLR2F	0.586046	5.108124e-11	8.850847e-7	4.658341e-8
20	8060611	8163964	NM_005388	PDCL	0.585624	5.313753e-11	9.207140e-7	4.603570e-8
21	8060611	8067382	NM_002792	PSMA7	0.584477	5.913109e-11	1.024564e-6	4.878878e-8
22	8060611	7978201	NM_006156	NEDD8	0.583234	6.637011e-11	1.149995e-6	5.227250e-8
23	8060611	8137252	NM_130759	GIMAP1	0.583047	6.752908e-11	1.170076e-6	5.087289e-8
24	8060611	8030437	NM_198319	PRMT1	0.582505	7.099838e-11	1.230189e-6	5.125787e-8
25	8060611	8000323	NM_005003	NDUFAB1	0.582440	7.143059e-11	1.237678e-6	4.950712e-8
26	8060611	8063369	NM_018683	RNF114	0.582083	7.382501e-11	1.279166e-6	4.919869e-8
27	8060611	7942586	NM_001005	RPS3	0.580581	8.477374e-11	1.468875e-6	5.440276e-8
28	8060611	8019046	NM_014740	EIF4A3	0.579472	9.384114e-11	1.625985e-6	5.807091e-8
29	8060611	8115158	NM_001025071	RPS14	0.579093	9.715312e-11	1.683372e-6	5.804731e-8
30	8060611	7900354	NM_006112	PPIE	0.578661	1.010623e-10	1.751106e-6	5.837019e-8
31	8060611	8064502	NM_003091	SNRPB	0.578487	1.026812e-10	1.779158e-6	5.739219e-8
32	8060611	7963911	NM_001780	CD63	0.578070	1.066547e-10	1.848006e-6	5.775017e-8
33	8060611	7914940	NM_031280	MRPS15	0.575414	1.356922e-10	2.351139e-6	7.124663e-8
34	8060611	7996490	NM_014187	TMEM208	0.572221	1.807238e-10	3.131401e-6	9.210003e-8
35	8060611	8013348	NM_002952	RPS2	0.571998	1.843581e-10	3.194372e-6	9.126777e-8
36	8060611	7952056	NM_000732	CD3D	0.571405	1.943783e-10	3.367992e-6	9.355534e-8
37	8060611	7987172	NM_020154	C15orf24	0.571219	1.976220e-10	3.424197e-6	9.254586e-8
38	8060611	7998655	NM_002952	RPS2	0.570348	2.135179e-10	3.699625e-6	9.735856e-8
39	8060611	8051773	ENST00000414823		0.569984	2.205225e-10	3.820994e-6	9.797421e-8
40	8060611	8009227	NM_002805	PSMC5	0.569215	2.360441e-10	4.089937e-6	1.022484e-7
41	8060611	8043718	NM_001862	COX5B	0.568751	2.459381e-10	4.261369e-6	1.039358e-7
42	8060611	8047059	NM_031314	HNRNPC	0.568316	2.555397e-10	4.427736e-6	1.054223e-7
43	8060611	7978824	NM_001030001	RPS29	0.567710	2.695458e-10	4.670421e-6	1.086144e-7
44	8060611	7921752	NM_001025598	ARHGAP30	0.567694	2.699338e-10	4.677143e-6	1.062987e-7
45	8060611	7955721	NM_001004304	ZNF740	0.566953	2.880772e-10	4.991513e-6	1.109225e-7
46	8060611	7937287	NM_002817	PSMD13	0.566903	2.893522e-10	5.013605e-6	1.089914e-7
47	8060611	7954006	ENST00000397627		0.566807	2.917982e-10	5.055987e-6	1.075742e-7
48	8060611	7935647	NM_078470	COX15	0.566717	2.941026e-10	5.095916e-6	1.061649e-7
49	8060611	7990211	NM_000520	HEXA	0.566453	3.009823e-10	5.215121e-6	1.064310e-7
50	8060611	8002919	NM_001130089	KARS	0.566204	3.076357e-10	5.330405e-6	1.066081e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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