[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1214	8130608	NM_005577	LPA		lipoprotein, Lp(a)

Fetching correlation data, please wait...
Getting list of correlations for id 1214.
Getting list of p-values for id 1214.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8130608	8137252	NM_130759	GIMAP1	-0.663900	1.170730e-14	2.028524e-10	2.028524e-10
2	8130608	8041000	NM_007266	GPN1	-0.613025	3.627051e-12	6.284592e-8	3.142296e-8
3	8130608	7918345	NM_002790	PSMA5	-0.610584	4.655543e-12	8.066659e-8	2.688886e-8
4	8130608	7990211	NM_000520	HEXA	-0.602296	1.069693e-11	1.853458e-7	4.633645e-8
5	8130608	8002919	NM_001130089	KARS	-0.601915	1.110794e-11	1.924673e-7	3.849347e-8
6	8130608	7897737	NM_198545	C1orf187	0.601277	1.182982e-11	2.049753e-7	3.416254e-8
7	8130608	8144184	NM_020728	ESYT2	-0.596467	1.893247e-11	3.280429e-7	4.686328e-8
8	8130608	8161988	NM_013438	UBQLN1	-0.596032	1.974628e-11	3.421437e-7	4.276797e-8
9	8130608	8117888	NM_006325	RAN	-0.590942	3.218460e-11	5.576626e-7	6.196251e-8
10	8130608	8150906	NM_017813	IMPAD1	-0.588047	4.233149e-11	7.334777e-7	7.334777e-8
11	8130608	8060758	NM_000311	PRNP	-0.587958	4.268978e-11	7.396859e-7	6.724417e-8
12	8130608	8006392	NM_002815	PSMD11	-0.587582	4.422627e-11	7.663086e-7	6.385905e-8
13	8130608	7960553	NM_016497	MRPL51	-0.587433	4.485002e-11	7.771163e-7	5.977817e-8
14	8130608	8020806	NM_017831	RNF125	-0.586852	4.736605e-11	8.207116e-7	5.862226e-8
15	8130608	8005512	NM_002767	PRPSAP2	-0.586765	4.775443e-11	8.274409e-7	5.516273e-8
16	8130608	8115681	NM_024594	PANK3	-0.584687	5.799034e-11	1.004799e-6	6.279992e-8
17	8130608	7994058	NM_001039	SCNN1G	0.583990	6.187369e-11	1.072085e-6	6.306385e-8
18	8130608	8088384	NM_000925	PDHB	-0.578705	1.006570e-10	1.744085e-6	9.689359e-8
19	8130608	8139706	NM_014302	SEC61G	-0.578665	1.010280e-10	1.750512e-6	9.213222e-8
20	8130608	8018315	NM_006937	SUMO2	-0.577962	1.077077e-10	1.866251e-6	9.331255e-8
21	8130608	8093156	NM_007362	NCBP2	-0.576920	1.184051e-10	2.051606e-6	9.769552e-8
22	8130608	7962083			0.575700	1.322308e-10	2.291163e-6	1.041438e-7
23	8130608	8073192	NM_006003	UQCRFS1	-0.575358	1.363756e-10	2.362980e-6	1.027383e-7
24	8130608	8027650	NM_005499	UBA2	-0.575167	1.387494e-10	2.404110e-6	1.001713e-7
25	8130608	8004255	NM_181844	BCL6B	0.573869	1.559309e-10	2.701815e-6	1.080726e-7
26	8130608	8098414	NM_021928	SPCS3	-0.573383	1.628818e-10	2.822253e-6	1.085482e-7
27	8130608	8100834	NM_002092	GRSF1	-0.573163	1.661303e-10	2.878540e-6	1.066126e-7
28	8130608	8178322	NM_006937	SUMO2	-0.572886	1.702962e-10	2.950722e-6	1.053829e-7
29	8130608	7920317	NM_004515	ILF2	-0.571327	1.957214e-10	3.391266e-6	1.169402e-7
30	8130608	7967149	NM_016237	ANAPC5	-0.570812	2.048964e-10	3.550240e-6	1.183413e-7
31	8130608	7934326	NM_016065	MRPS16	-0.570514	2.103926e-10	3.645473e-6	1.175959e-7
32	8130608	8062174	NM_198398	ERGIC3	-0.569484	2.304993e-10	3.993862e-6	1.248082e-7
33	8130608	8095574	NM_000788	DCK	-0.569031	2.399186e-10	4.157069e-6	1.259718e-7
34	8130608	8170097	NM_001042537	SLC9A6	-0.568247	2.570977e-10	4.454731e-6	1.310215e-7
35	8130608	7898337	NM_018090	NECAP2	-0.568099	2.604700e-10	4.513164e-6	1.289475e-7
36	8130608	8109368	NM_005754	G3BP1	-0.567889	2.653283e-10	4.597343e-6	1.277040e-7
37	8130608	8047641	NM_177538	CYP20A1	-0.567812	2.671472e-10	4.628859e-6	1.251043e-7
38	8130608	7999520	NM_015659	RSL1D1	-0.567486	2.749164e-10	4.763476e-6	1.253546e-7
39	8130608	8110803	NM_030782	CLPTM1L	-0.566321	3.044849e-10	5.275810e-6	1.352772e-7
40	8130608	8147483	NM_178812	MTDH	-0.566113	3.100729e-10	5.372633e-6	1.343158e-7
41	8130608	8135576	NM_015641	TES	-0.565894	3.160696e-10	5.476537e-6	1.335741e-7
42	8130608	8028514	NM_013234	EIF3K	-0.565709	3.212370e-10	5.566073e-6	1.325256e-7
43	8130608	8166184	NM_007220	CA5B	-0.565265	3.339146e-10	5.785738e-6	1.345520e-7
44	8130608	8116313	NM_001142306	C5orf60	0.564753	3.491709e-10	6.050084e-6	1.375019e-7
45	8130608	8043197	NM_003761	VAMP8	-0.564734	3.497306e-10	6.059783e-6	1.346618e-7
46	8130608	8078984	NM_003973	RPL14	-0.564566	3.548888e-10	6.149158e-6	1.336774e-7
47	8130608	7900228	NM_004552	NDUFS5	-0.564476	3.576785e-10	6.197495e-6	1.318616e-7
48	8130608	8081945	NM_004547	NDUFB4	-0.564185	3.668566e-10	6.356524e-6	1.324276e-7
49	8130608	8093314	NM_004547	NDUFB4	-0.564185	3.668566e-10	6.356524e-6	1.297250e-7
50	8130608	8123524	NM_018303	EXOC2	-0.563946	3.745503e-10	6.489833e-6	1.297967e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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