[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7266	7963064	NM_006337	MCRS1		microspherule protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 7266.
Getting list of p-values for id 7266.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7963064	7913256	NM_005216	DDOST	0.618226	2.115612e-12	3.665722e-8	3.665722e-8
2	7963064	8016099	NM_004247	EFTUD2	0.591462	3.062946e-11	5.307167e-7	2.653584e-7
3	7963064	8035553	NM_007263	COPE	0.591147	3.156281e-11	5.468889e-7	1.822963e-7
4	7963064	8028104	NM_014266	HCST	0.578249	1.049260e-10	1.818052e-6	4.545130e-7
5	7963064	8027621	NM_000175	GPI	0.577941	1.079170e-10	1.869878e-6	3.739756e-7
6	7963064	7989619	NM_000942	PPIB	0.573103	1.670220e-10	2.893990e-6	4.823317e-7
7	7963064	8149638	NM_003974	DOK2	0.572877	1.704410e-10	2.953231e-6	4.218901e-7
8	7963064	7949765	NM_001008709	PPP1CA	0.570908	2.031642e-10	3.520227e-6	4.400284e-7
9	7963064	8030007	NM_001425	EMP3	0.568319	2.554861e-10	4.426807e-6	4.918674e-7
10	7963064	8004247	NM_001142798	C17orf49	0.568166	2.589556e-10	4.486924e-6	4.486924e-7
11	7963064	8136849	NM_001143679	GSTK1	0.564902	3.446541e-10	5.971821e-6	5.428928e-7
12	7963064	8119648	NM_057161	KLHDC3	0.563701	3.826056e-10	6.629407e-6	5.524506e-7
13	7963064	8040908	NM_014748	SNX17	0.563641	3.845840e-10	6.663687e-6	5.125913e-7
14	7963064	8139433	NM_033054	MYO1G	0.562949	4.083555e-10	7.075576e-6	5.053983e-7
15	7963064	7915504	NM_022821	ELOVL1	0.559678	5.411992e-10	9.377358e-6	6.251572e-7
16	7963064	8164883	NM_033161	SURF4	0.555695	7.594341e-10	1.315871e-5	8.224197e-7
17	7963064	8134552	NM_005720	ARPC1B	0.555036	8.029124e-10	1.391206e-5	8.183566e-7
18	7963064	7903619	NM_006513	SARS	0.553550	9.098307e-10	1.576464e-5	8.758131e-7
19	7963064	8030881	NM_014225	PPP2R1A	0.552005	1.035433e-9	1.794095e-5	9.442606e-7
20	7963064	8110803	NM_030782	CLPTM1L	0.551330	1.095354e-9	1.897920e-5	9.489601e-7
21	7963064	7950473	NM_004041	ARRB1	0.550929	1.132482e-9	1.962251e-5	9.344054e-7
22	7963064	8064522	NM_174856	IDH3B	0.546468	1.637016e-9	2.836457e-5	1.289299e-6
23	7963064	8004497	NM_001416	EIF4A1	0.545805	1.728319e-9	2.994658e-5	1.302025e-6
24	7963064	8085300	NR_024272	SEC13	0.544629	1.902454e-9	3.296382e-5	1.373493e-6
25	7963064	7912198	NM_001428	ENO1	0.544443	1.931443e-9	3.346612e-5	1.338645e-6
26	7963064	7914563	NM_003680	YARS	0.538939	3.011703e-9	5.218377e-5	2.007068e-6
27	7963064	8030630	NM_007121	NR1H2	0.538125	3.213837e-9	5.568616e-5	2.062450e-6
28	7963064	8033300	NM_001080452	GPR108	0.538118	3.215656e-9	5.571768e-5	1.989917e-6
29	7963064	8073192	NM_006003	UQCRFS1	0.536777	3.577974e-9	6.199556e-5	2.137778e-6
30	7963064	8077550	NM_001077525	MTMR14	0.535218	4.048145e-9	7.014221e-5	2.338074e-6
31	7963064	8134699	NM_006833	COPS6	0.532603	4.972900e-9	8.616543e-5	2.779530e-6
32	7963064	7916590	NM_001625	AK2	0.532594	4.976398e-9	8.622605e-5	2.694564e-6
33	7963064	7936028	NM_005736	ACTR1A	0.532594	4.976447e-9	8.622689e-5	2.612936e-6
34	7963064	7994826	NM_002209	ITGAL	0.531514	5.415320e-9	9.383125e-5	2.759743e-6
35	7963064	8116020	NM_006816	LMAN2	0.531491	5.424927e-9	9.399771e-5	2.685649e-6
36	7963064	7913682	NM_000191	HMGCL	0.529678	6.246974e-9	1.082413e-4	3.006704e-6
37	7963064	8110166	NM_138820	HIGD2A	0.529567	6.301237e-9	1.091815e-4	2.950852e-6
38	7963064	8087100	NM_003365	UQCRC1	0.529184	6.491116e-9	1.124716e-4	2.959778e-6
39	7963064	8075924	NM_002405	MFNG	0.528770	6.702270e-9	1.161302e-4	2.977698e-6
40	7963064	8002266	NM_001039690	CHTF8	0.528112	7.052349e-9	1.221960e-4	3.054901e-6
41	7963064	8080438	NM_014041	SPCS1	0.527517	7.383117e-9	1.279273e-4	3.120177e-6
42	7963064	7941164	NM_004927	MRPL49	0.525138	8.862707e-9	1.535641e-4	3.656289e-6
43	7963064	8152628	NM_024295	DERL1	0.525013	8.947970e-9	1.550415e-4	3.605616e-6
44	7963064	8076690	NM_001009880	C22orf9	0.524869	9.047164e-9	1.567602e-4	3.562732e-6
45	7963064	7923812	NM_003929	RAB7L1	0.524754	9.126782e-9	1.581398e-4	3.514217e-6
46	7963064	8037144	NM_133328	DEDD2	0.522835	1.056265e-8	1.830190e-4	3.978675e-6
47	7963064	8110569	NM_003900	SQSTM1	0.522190	1.109195e-8	1.921903e-4	4.089154e-6
48	7963064	7994769	NM_007074	CORO1A	0.521568	1.162620e-8	2.014472e-4	4.196816e-6
49	7963064	8072687	NM_006739	MCM5	0.521347	1.182259e-8	2.048500e-4	4.180612e-6
50	7963064	7914917	NM_032881	LSM10	0.521077	1.206569e-8	2.090622e-4	4.181244e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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