[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7163	8108593	NM_017706	WDR55		WD repeat domain 55

Fetching correlation data, please wait...
Getting list of correlations for id 7163.
Getting list of p-values for id 7163.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8108593	8013696	NM_014680	KIAA0100	0.763066	3.055887e-21	5.294936e-17	5.294936e-17
2	8108593	8072529	NM_014662	DEPDC5	0.730997	8.546011e-19	1.480767e-14	7.403836e-15
3	8108593	8082478	NM_016128	COPG	0.730989	8.557250e-19	1.482715e-14	4.942382e-15
4	8108593	7921752	NM_001025598	ARHGAP30	0.730279	9.605400e-19	1.664328e-14	4.160819e-15
5	8108593	7925851	NM_014023	WDR37	0.718621	6.088343e-18	1.054927e-13	2.109854e-14
6	8108593	7956443	NM_004990	MARS	0.715055	1.051366e-17	1.821702e-13	3.036170e-14
7	8108593	7947784	NM_032389	ARFGAP2	0.714337	1.172453e-17	2.031509e-13	2.902155e-14
8	8108593	7955908	NM_005337	NCKAP1L	0.713932	1.246653e-17	2.160076e-13	2.700095e-14
9	8108593	8136849	NM_001143679	GSTK1	0.712921	1.452204e-17	2.516234e-13	2.795815e-14
10	8108593	7963935	NM_032364	DNAJC14	0.712808	1.477224e-17	2.559586e-13	2.559586e-14
11	8108593	8006392	NM_002815	PSMD11	0.701926	7.330434e-17	1.270144e-12	1.154677e-13
12	8108593	7940051	NM_015457	ZDHHC5	0.701590	7.693514e-17	1.333055e-12	1.110879e-13
13	8108593	8146142	NM_178819	AGPAT6	0.701008	8.364171e-17	1.449260e-12	1.114815e-13
14	8108593	7952557	NM_003139	SRPR	0.700679	8.767123e-17	1.519079e-12	1.085057e-13
15	8108593	8005903	NM_003170	SUPT6H	0.699752	1.000970e-16	1.734380e-12	1.156253e-13
16	8108593	8063636	NM_001001433	STX16	0.697104	1.457049e-16	2.524629e-12	1.577893e-13
17	8108593	8053909	NM_014014	SNRNP200	0.695071	1.938812e-16	3.359379e-12	1.976105e-13
18	8108593	8011542	NM_015113	ZZEF1	0.691209	3.313955e-16	5.742089e-12	3.190050e-13
19	8108593	8064336	NM_144628	TBC1D20	0.689874	3.980681e-16	6.897327e-12	3.630172e-13
20	8108593	7987840	NM_015289	VPS39	0.689275	4.320915e-16	7.486849e-12	3.743425e-13
21	8108593	7916590	NM_001625	AK2	0.689250	4.335639e-16	7.512361e-12	3.577315e-13
22	8108593	8024238	NM_001280	CIRBP	0.689223	4.351712e-16	7.540212e-12	3.427369e-13
23	8108593	8077550	NM_001077525	MTMR14	0.688521	4.788692e-16	8.297367e-12	3.607551e-13
24	8108593	7978208	NM_012461	TINF2	0.688496	4.805287e-16	8.326121e-12	3.469217e-13
25	8108593	8139433	NM_033054	MYO1G	0.687279	5.669422e-16	9.823408e-12	3.929363e-13
26	8108593	7994826	NM_002209	ITGAL	0.686828	6.026262e-16	1.044170e-11	4.016040e-13
27	8108593	8068974	NM_003274	TRAPPC10	0.684958	7.754899e-16	1.343691e-11	4.976635e-13
28	8108593	8164883	NM_033161	SURF4	0.683933	8.896416e-16	1.541482e-11	5.505293e-13
29	8108593	8133434	NM_022170	EIF4H	0.683785	9.073873e-16	1.572230e-11	5.421483e-13
30	8108593	8117760	NM_001098479	HLA-F	0.683747	9.120316e-16	1.580277e-11	5.267590e-13
31	8108593	8007715	NM_021079	NMT1	0.683436	9.506974e-16	1.647273e-11	5.313785e-13
32	8108593	8099340	NM_017491	WDR1	0.680957	1.321507e-15	2.289776e-11	7.155549e-13
33	8108593	7979671	NM_145113	MAX	0.676654	2.322833e-15	4.024773e-11	1.219628e-12
34	8108593	8063369	NM_018683	RNF114	0.675783	2.601050e-15	4.506839e-11	1.325541e-12
35	8108593	7967841	NM_001161344	CHFR	0.675420	2.725918e-15	4.723198e-11	1.349485e-12
36	8108593	8115783	NM_005990	STK10	0.674839	2.938595e-15	5.091704e-11	1.414362e-12
37	8108593	8016980	hsa-mir-142		0.674683	2.998355e-15	5.195250e-11	1.404122e-12
38	8108593	8061186	NM_006363	SEC23B	0.673912	3.311320e-15	5.737524e-11	1.509875e-12
39	8108593	7900833	NM_014663	KDM4A	0.672159	4.145195e-15	7.182380e-11	1.841636e-12
40	8108593	7999233	NM_032569	GLYR1	0.671205	4.681404e-15	8.111468e-11	2.027867e-12
41	8108593	8093685	NM_002111	HTT	0.670631	5.035694e-15	8.725346e-11	2.128133e-12
42	8108593	8064522	NM_174856	IDH3B	0.669477	5.828312e-15	1.009872e-10	2.404456e-12
43	8108593	8146171	NM_001556	IKBKB	0.668739	6.397304e-15	1.108461e-10	2.577816e-12
44	8108593	8132592	NM_002541	OGDH	0.668680	6.445230e-15	1.116765e-10	2.538102e-12
45	8108593	7976876	NM_001376	DYNC1H1	0.668432	6.649660e-15	1.152187e-10	2.560415e-12
46	8108593	8138773	NM_022170	EIF4H	0.668263	6.792892e-15	1.177004e-10	2.558705e-12
47	8108593	8160914	NM_007126	VCP	0.668143	6.896044e-15	1.194878e-10	2.542293e-12
48	8108593	8018922	NM_004762	CYTH1	0.667848	7.156548e-15	1.240015e-10	2.583365e-12
49	8108593	7979849	NM_003861	DCAF5	0.665439	9.672307e-15	1.675921e-10	3.420246e-12
50	8108593	8172827	NM_004187	KDM5C	0.665382	9.740426e-15	1.687724e-10	3.375447e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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