[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4952	7981364	NM_032630	CINP		cyclin-dependent kinase 2 interacting protein

Fetching correlation data, please wait...
Getting list of correlations for id 4952.
Getting list of p-values for id 4952.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.113 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7981364	8132646	NM_031443	CCM2	0.673288	3.587711e-15	6.216427e-11	6.216427e-11
2	7981364	8140151	NM_181471	RFC2	0.670731	4.972190e-15	8.615313e-11	4.307656e-11
3	7981364	7983512	NM_021199	SQRDL	0.653128	4.320682e-14	7.486446e-10	2.495482e-10
4	7981364	8019046	NM_014740	EIF4A3	0.645045	1.112636e-13	1.927864e-9	4.819659e-10
5	7981364	8133442	NM_032464	LAT2	0.643658	1.304896e-13	2.260994e-9	4.521987e-10
6	7981364	8087473	NM_153273	IP6K1	0.640993	1.768678e-13	3.064588e-9	5.107647e-10
7	7981364	7963911	NM_001780	CD63	0.636620	2.894795e-13	5.015812e-9	7.165445e-10
8	7981364	8030007	NM_001425	EMP3	0.631289	5.222328e-13	9.048727e-9	1.131091e-9
9	7981364	8093086	NM_005017	PCYT1A	0.630608	5.626613e-13	9.749232e-9	1.083248e-9
10	7981364	7994756	NM_002720	PPP4C	0.628801	6.851407e-13	1.187143e-8	1.187143e-9
11	7981364	8134552	NM_005720	ARPC1B	0.627899	7.555964e-13	1.309222e-8	1.190202e-9
12	7981364	7973564	NM_176783	PSME1	0.627741	7.686578e-13	1.331853e-8	1.109878e-9
13	7981364	7900922	NM_004047	ATP6V0B	0.625991	9.283177e-13	1.608496e-8	1.237305e-9
14	7981364	8077652	NM_005718	ARPC4	0.622716	1.317554e-12	2.282926e-8	1.630661e-9
15	7981364	7999233	NM_032569	GLYR1	0.620903	1.596691e-12	2.766587e-8	1.844392e-9
16	7981364	8025076	NM_005428	VAV1	0.620486	1.668571e-12	2.891133e-8	1.806958e-9
17	7981364	7920401	NM_014437	SLC39A1	0.619186	1.913115e-12	3.314854e-8	1.949914e-9
18	7981364	8134589	NM_003910	BUD31	0.615052	2.943092e-12	5.099496e-8	2.833053e-9
19	7981364	8111129	NM_033414	ZNF622	0.614669	3.061962e-12	5.305462e-8	2.792349e-9
20	7981364	8149707	NM_018688	BIN3	0.613254	3.542643e-12	6.138337e-8	3.069169e-9
21	7981364	7978208	NM_012461	TINF2	0.610781	4.563280e-12	7.906796e-8	3.765141e-9
22	7981364	8039796	NM_014453	CHMP2A	0.609515	5.189900e-12	8.992540e-8	4.087518e-9
23	7981364	8009653	NM_007261	CD300A	0.609233	5.340214e-12	9.252989e-8	4.023039e-9
24	7981364	8171802	NM_001037171	ACOT9	0.608763	5.600974e-12	9.704807e-8	4.043670e-9
25	7981364	7978201	NM_006156	NEDD8	0.607077	6.639078e-12	1.150353e-7	4.601412e-9
26	7981364	8006812	NM_002795	PSMB3	0.606021	7.381975e-12	1.279075e-7	4.919518e-9
27	7981364	8074969	NM_001355	DDT	0.605918	7.458713e-12	1.292371e-7	4.786560e-9
28	7981364	7914218	NM_001135218	TAF12	0.604546	8.554425e-12	1.482225e-7	5.293661e-9
29	7981364	8002133	NM_002801	PSMB10	0.604450	8.636903e-12	1.496516e-7	5.160401e-9
30	7981364	8099073	NM_002337	LRPAP1	0.602223	1.077390e-11	1.866794e-7	6.222646e-9
31	7981364	8035304	NM_004335	BST2	0.601300	1.180288e-11	2.045085e-7	6.597049e-9
32	7981364	7921738	NM_007122	USF1	0.601154	1.197370e-11	2.074683e-7	6.483383e-9
33	7981364	8053417	NM_001747	CAPG	0.600858	1.232769e-11	2.136018e-7	6.472783e-9
34	7981364	8042917	NM_001381	DOK1	0.599703	1.380971e-11	2.392809e-7	7.037673e-9
35	7981364	7962869	NM_004818	DDX23	0.599579	1.397746e-11	2.421874e-7	6.919641e-9
36	7981364	8179103	NM_005516	HLA-E	0.594408	2.309844e-11	4.002267e-7	1.111741e-8
37	7981364	8177788	NM_005516	HLA-E	0.594408	2.309844e-11	4.002267e-7	1.081694e-8
38	7981364	8108378	NM_001903	CTNNA1	0.594208	2.354833e-11	4.080219e-7	1.073742e-8
39	7981364	8117890	NM_005516	HLA-E	0.593561	2.505825e-11	4.341843e-7	1.113293e-8
40	7981364	7973660	NM_016576	GMPR2	0.592051	2.895586e-11	5.017182e-7	1.254296e-8
41	7981364	7899361	NM_177424	STX12	0.591729	2.985936e-11	5.173732e-7	1.261886e-8
42	7981364	7996725	NM_017803	DUS2L	0.590981	3.206403e-11	5.555735e-7	1.322794e-8
43	7981364	8174076	NM_000169	GLA	0.589395	3.727266e-11	6.458234e-7	1.501915e-8
44	7981364	7932069	NM_014142	NUDT5	0.588418	4.087869e-11	7.083051e-7	1.609784e-8
45	7981364	7914887	NM_014408	TRAPPC3	0.588103	4.211024e-11	7.296441e-7	1.621431e-8
46	7981364	8018305	NM_016185	HN1	0.587697	4.375041e-11	7.580634e-7	1.647964e-8
47	7981364	7936028	NM_005736	ACTR1A	0.587123	4.617345e-11	8.000473e-7	1.702228e-8
48	7981364	7897078	NM_007033	RER1	0.587119	4.619396e-11	8.004027e-7	1.667506e-8
49	7981364	8077550	NM_001077525	MTMR14	0.586546	4.874319e-11	8.445733e-7	1.723619e-8
50	7981364	7975645	NM_021188	ZNF410	0.586126	5.070115e-11	8.784989e-7	1.756998e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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