[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5870	8018694	NM_002766	PRPSAP1		phosphoribosyl pyrophosphate synthetase-associated protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 5870.
Getting list of p-values for id 5870.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8018694	8007715	NM_021079	NMT1	0.674550	3.050242e-15	5.285154e-11	5.285154e-11
2	8018694	8141363	NM_033017	TRIM4	0.671022	4.791829e-15	8.302802e-11	4.151401e-11
3	8018694	7913256	NM_005216	DDOST	0.669832	5.572685e-15	9.655792e-11	3.218597e-11
4	8018694	8114396	NM_004661	CDC23	0.658282	2.328745e-14	4.035016e-10	1.008754e-10
5	8018694	8040908	NM_014748	SNX17	0.654083	3.856659e-14	6.682434e-10	1.336487e-10
6	8018694	7915504	NM_022821	ELOVL1	0.653064	4.354114e-14	7.544373e-10	1.257396e-10
7	8018694	8133434	NM_022170	EIF4H	0.648901	7.110617e-14	1.232057e-9	1.760081e-10
8	8018694	8110803	NM_030782	CLPTM1L	0.645989	9.976780e-14	1.728677e-9	2.160846e-10
9	8018694	7978208	NM_012461	TINF2	0.642357	1.514417e-13	2.624031e-9	2.915590e-10
10	8018694	7948744	NM_198335	GANAB	0.639192	2.168748e-13	3.757790e-9	3.757790e-10
11	8018694	7949075	NM_016404	TRMT112	0.638084	2.456724e-13	4.256766e-9	3.869787e-10
12	8018694	8119648	NM_057161	KLHDC3	0.637965	2.490000e-13	4.314422e-9	3.595352e-10
13	8018694	7906185	NM_144772	APOA1BP	0.637505	2.621640e-13	4.542516e-9	3.494243e-10
14	8018694	8062349	NM_002951	RPN2	0.635775	3.180965e-13	5.511659e-9	3.936899e-10
15	8018694	8143781	NM_024711	GIMAP6	0.634300	3.747392e-13	6.493106e-9	4.328737e-10
16	8018694	8051066	NM_002437	MPV17	0.633865	3.932462e-13	6.813777e-9	4.258611e-10
17	8018694	7920903	NM_003145	SSR2	0.633443	4.120251e-13	7.139158e-9	4.199505e-10
18	8018694	8109368	NM_005754	G3BP1	0.631707	4.988597e-13	8.643742e-9	4.802079e-10
19	8018694	8064522	NM_174856	IDH3B	0.631016	5.380824e-13	9.323354e-9	4.907028e-10
20	8018694	8138773	NM_022170	EIF4H	0.630990	5.396286e-13	9.350145e-9	4.675073e-10
21	8018694	8075924	NM_002405	MFNG	0.626744	8.560000e-13	1.483191e-8	7.062815e-10
22	8018694	8080438	NM_014041	SPCS1	0.626214	9.063048e-13	1.570354e-8	7.137974e-10
23	8018694	7929634	NM_198046	ZDHHC16	0.626199	9.077762e-13	1.572904e-8	6.838713e-10
24	8018694	8016099	NM_004247	EFTUD2	0.625995	9.279880e-13	1.607925e-8	6.699687e-10
25	8018694	7903619	NM_006513	SARS	0.623563	1.203999e-12	2.086170e-8	8.344678e-10
26	8018694	7963614	NM_000889	ITGB7	0.623406	1.224314e-12	2.121370e-8	8.159114e-10
27	8018694	7914563	NM_003680	YARS	0.622634	1.329084e-12	2.302903e-8	8.529270e-10
28	8018694	8154848	NM_007343	PRSS3	-0.620006	1.755030e-12	3.040941e-8	1.086050e-9
29	8018694	7941164	NM_004927	MRPL49	0.617592	2.260506e-12	3.916779e-8	1.350614e-9
30	8018694	7967149	NM_016237	ANAPC5	0.616997	2.404967e-12	4.167086e-8	1.389029e-9
31	8018694	8075585	NM_014306	C22orf28	0.616336	2.576319e-12	4.463988e-8	1.439996e-9
32	8018694	7990211	NM_000520	HEXA	0.615732	2.742879e-12	4.752586e-8	1.485183e-9
33	8018694	7916590	NM_001625	AK2	0.615589	2.783943e-12	4.823738e-8	1.461739e-9
34	8018694	7940679	NM_173810	TTC9C	0.615033	2.949048e-12	5.109816e-8	1.502887e-9
35	8018694	8153449	NM_032378	EEF1D	0.614626	3.075488e-12	5.328898e-8	1.522542e-9
36	8018694	8062174	NM_198398	ERGIC3	0.614415	3.143243e-12	5.446296e-8	1.512860e-9
37	8018694	8067543	ENST00000370520		-0.614050	3.263828e-12	5.655236e-8	1.528442e-9
38	8018694	8035905	NM_032139	ANKRD27	0.614018	3.274879e-12	5.674383e-8	1.493259e-9
39	8018694	8064351	NM_177559	CSNK2A1	0.613821	3.342049e-12	5.790768e-8	1.484812e-9
40	8018694	7982507	NM_016454	TMEM85	0.613438	3.476320e-12	6.023419e-8	1.505855e-9
41	8018694	8149638	NM_003974	DOK2	0.613302	3.525125e-12	6.107984e-8	1.489752e-9
42	8018694	8104166	NM_004168	SDHA	0.612657	3.766840e-12	6.526804e-8	1.554001e-9
43	8018694	7941382	NM_182710	KAT5	0.611353	4.304630e-12	7.458633e-8	1.734566e-9
44	8018694	8020806	NM_017831	RNF125	0.611188	4.377539e-12	7.584962e-8	1.723855e-9
45	8018694	8117888	NM_006325	RAN	0.609940	4.970643e-12	8.612633e-8	1.913919e-9
46	8018694	7919226	NM_006468	POLR3C	0.609601	5.145068e-12	8.914859e-8	1.938013e-9
47	8018694	8006392	NM_002815	PSMD11	0.609454	5.222253e-12	9.048597e-8	1.925233e-9
48	8018694	7919950	NM_002651	PI4KB	0.609246	5.333600e-12	9.241528e-8	1.925318e-9
49	8018694	7933582	NM_006327	TIMM23	0.607530	6.343157e-12	1.099079e-7	2.243018e-9
50	8018694	8041000	NM_007266	GPN1	0.606965	6.714229e-12	1.163374e-7	2.326749e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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