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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
702 7920757 NM_002004 FDPS link to infopage farnesyl diphosphate synthase
7622 7905986 NM_002004 FDPS link to infopage farnesyl diphosphate synthase

Fetching correlation data, please wait...
Getting list of correlations for id 702.
Getting list of p-values for id 702.
1 of 2 done.
Getting list of correlations for id 7622.
Getting list of p-values for id 7622.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.213 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7905986 8165309 NM_003792 EDF1 link to infopage 0.754707 1.441945e-20 4.996916e-16 4.996916e-16
2 7905986 7912670 NM_006004 UQCRH link to infopage 0.695360 1.861982e-16 6.452511e-12 3.226255e-12
3 7905986 8148270 NM_005005 NDUFB9 link to infopage 0.694753 2.026808e-16 7.023699e-12 2.341233e-12
4 7905986 7899737 NM_003757 EIF3I link to infopage 0.691899 3.012868e-16 1.044079e-11 2.610199e-12
5 7905986 8015712 NM_001040431 CCDC56 link to infopage 0.678964 1.718231e-15 5.954359e-11 1.190872e-11
6 7905986 8039939 NM_017971 MRPL20 link to infopage 0.675875 2.570225e-15 8.906856e-11 1.484476e-11
7 7905986 7911559 NM_017971 MRPL20 link to infopage 0.675875 2.570225e-15 8.906856e-11 1.272408e-11
8 7905986 8114618 NM_002488 NDUFA2 link to infopage 0.672799 3.819777e-15 1.323706e-10 1.654632e-11
9 7905986 8073645 NM_015380 SAMM50 link to infopage 0.672542 3.947502e-15 1.367967e-10 1.519964e-11
10 7905986 8043100 NM_021103 TMSB10 link to infopage 0.668077 6.953164e-15 2.409550e-10 2.409550e-11
11 7905986 8030007 NM_001425 EMP3 link to infopage 0.665856 9.182021e-15 3.181938e-10 2.892671e-11
12 7905986 7929243 NM_017838 NHP2 link to infopage 0.665376 9.748263e-15 3.378163e-10 2.815136e-11
13 7905986 8169659 NM_004541 NDUFA1 link to infopage 0.664264 1.119175e-14 3.878388e-10 2.983375e-11
14 7905986 8172905 NM_004493 HSD17B10 link to infopage 0.663634 1.209866e-14 4.192669e-10 2.994764e-11
15 7905986 8084423 NM_002808 PSMD2 link to infopage 0.661367 1.599194e-14 5.541847e-10 3.694564e-11
16 7905986 7897404 NM_007262 PARK7 link to infopage 0.660765 1.721411e-14 5.965378e-10 3.728361e-11
17 7905986 8139758 NM_016139 CHCHD2 link to infopage 0.660204 1.843481e-14 6.388401e-10 3.757883e-11
18 7905986 7978201 NM_006156 NEDD8 link to infopage 0.652816 4.484135e-14 1.553932e-9 8.632956e-11
19 7905986 8009227 NM_002805 PSMC5 link to infopage 0.651497 5.241452e-14 1.816373e-9 9.559856e-11
20 7905986 7905733 NM_006118 HAX1 link to infopage 0.650550 5.860229e-14 2.030804e-9 1.015402e-10
21 7905986 8071737 NM_002415 MIF link to infopage 0.647004 8.870100e-14 3.073844e-9 1.463735e-10
22 7905986 8038382 NM_017916 PIH1D1 link to infopage 0.646332 9.588338e-14 3.322742e-9 1.510337e-10
23 7905986 8134552 NM_005720 ARPC1B link to infopage 0.646233 9.698585e-14 3.360948e-9 1.461282e-10
24 7905986 7940688 NM_002696 POLR2G link to infopage 0.642568 1.478271e-13 5.122800e-9 2.134500e-10
25 7905986 8063903 NM_001024 RPS21 link to infopage 0.642140 1.552320e-13 5.379411e-9 2.151764e-10
26 7905986 7991386 NM_006384 CIB1 link to infopage 0.641660 1.639487e-13 5.681479e-9 2.185184e-10
27 7905986 7920271 NM_019554 S100A4 link to infopage 0.638435 2.361634e-13 8.184006e-9 3.031113e-10
28 7905986 8028514 NM_013234 EIF3K link to infopage 0.637430 2.643946e-13 9.162330e-9 3.272261e-10
29 7905986 7960553 NM_016497 MRPL51 link to infopage 0.637419 2.647289e-13 9.173916e-9 3.163419e-10
30 7905986 8119648 NM_057161 KLHDC3 link to infopage 0.637204 2.711720e-13 9.397194e-9 3.132398e-10
31 7905986 7989619 NM_000942 PPIB link to infopage 0.636132 3.056947e-13 1.059354e-8 3.417272e-10
32 7905986 8000323 NM_005003 NDUFAB1 link to infopage 0.631900 4.883995e-13 1.692499e-8 5.289061e-10
33 7905986 8040908 NM_014748 SNX17 link to infopage 0.631142 5.307242e-13 1.839172e-8 5.573247e-10
34 7905986 8110166 NM_138820 HIGD2A link to infopage 0.630251 5.850678e-13 2.027494e-8 5.963218e-10
35 7905986 8160587 NM_002493 NDUFB6 link to infopage 0.629940 6.052506e-13 2.097435e-8 5.992672e-10
36 7905986 7913256 NM_005216 DDOST link to infopage 0.628549 7.041920e-13 2.440307e-8 6.778631e-10
37 7905986 7941927 NM_003977 AIP link to infopage 0.627713 7.709346e-13 2.671597e-8 7.220531e-10
38 7905986 7939825 NM_004551 NDUFS3 link to infopage 0.626118 9.157358e-13 3.173391e-8 8.351029e-10
39 7905986 8077770 NM_018462 C3orf10 link to infopage 0.625456 9.832935e-13 3.407505e-8 8.737193e-10
40 7905986 8043718 NM_001862 COX5B link to infopage 0.624833 1.051246e-12 3.642988e-8 9.107470e-10
41 7905986 8029129 NM_001022 RPS19 link to infopage 0.624708 1.065378e-12 3.691961e-8 9.004784e-10
42 7905986 7940835 NM_004074 COX8A link to infopage 0.624470 1.092797e-12 3.786979e-8 9.016617e-10
43 7905986 8002133 NM_002801 PSMB10 link to infopage 0.623477 1.215123e-12 4.210887e-8 9.792761e-10
44 7920757 8144281 NM_014629 ARHGEF10 link to infopage 0.623300 1.238157e-12 4.290709e-8 9.751612e-10
45 7905986 8042720 NM_006429 CCT7 link to infopage 0.622944 1.285990e-12 4.456469e-8 9.903264e-10
46 7905986 8164100 NM_007209 RPL35 link to infopage 0.622916 1.289826e-12 4.469763e-8 9.716876e-10
47 7920757 8057480 NM_002500 NEUROD1 link to infopage 0.620589 1.650540e-12 5.719780e-8 1.216974e-9
48 7905986 7959153 NM_004373 COX6A1 link to infopage 0.619124 1.925551e-12 6.672805e-8 1.390168e-9
49 7920757 8084496 NM_003741 CHRD link to infopage 0.619027 1.945294e-12 6.741222e-8 1.375760e-9
50 7905986 8116020 NM_006816 LMAN2 link to infopage 0.618835 1.984767e-12 6.878012e-8 1.375602e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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