[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
15487	8116020	NM_006816	LMAN2		lectin, mannose-binding 2

Fetching correlation data, please wait...
Getting list of correlations for id 15487.
Getting list of p-values for id 15487.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.146 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8116020	8134552	NM_005720	ARPC1B	0.897365	2.223250e-38	3.852226e-34	3.852226e-34
2	8116020	7978208	NM_012461	TINF2	0.860787	5.585209e-32	9.677492e-28	4.838746e-28
3	8116020	7940688	NM_002696	POLR2G	0.857873	1.502393e-31	2.603196e-27	8.677320e-28
4	8116020	8169659	NM_004541	NDUFA1	0.852993	7.504827e-31	1.300361e-26	3.250904e-27
5	8116020	7994756	NM_002720	PPP4C	0.852097	1.002299e-30	1.736683e-26	3.473367e-27
6	8116020	8030007	NM_001425	EMP3	0.848558	3.081612e-30	5.339509e-26	8.899181e-27
7	8116020	7963911	NM_001780	CD63	0.844031	1.244308e-29	2.156012e-25	3.080018e-26
8	8116020	8028514	NM_013234	EIF3K	0.836160	1.271892e-28	2.203808e-24	2.754759e-25
9	8116020	8064502	NM_003091	SNRPB	0.832236	3.871510e-28	6.708165e-24	7.453517e-25
10	8116020	8179019	NM_018950	HLA-F	0.832105	4.016861e-28	6.960014e-24	6.960014e-25
11	8116020	7989619	NM_000942	PPIB	0.829310	8.717686e-28	1.510513e-23	1.373194e-24
12	8116020	8138773	NM_022170	EIF4H	0.828662	1.041297e-27	1.804255e-23	1.503546e-24
13	8116020	7897404	NM_007262	PARK7	0.828181	1.187610e-27	2.057773e-23	1.582902e-24
14	8116020	7978201	NM_006156	NEDD8	0.828031	1.237103e-27	2.143529e-23	1.531092e-24
15	8116020	8009227	NM_002805	PSMC5	0.828009	1.244631e-27	2.156572e-23	1.437715e-24
16	8116020	8133434	NM_022170	EIF4H	0.827972	1.256924e-27	2.177873e-23	1.361171e-24
17	8116020	7958152	NM_002629	PGAM1	0.827666	1.366050e-27	2.366955e-23	1.392327e-24
18	8116020	8177717	NM_018950	HLA-F	0.826571	1.837845e-27	3.184435e-23	1.769130e-24
19	8116020	8117760	NM_001098479	HLA-F	0.825526	2.434882e-27	4.218920e-23	2.220484e-24
20	8116020	7929624	NM_002629	PGAM1	0.825450	2.485101e-27	4.305935e-23	2.152968e-24
21	8116020	7965480	NM_002629	PGAM1	0.825098	2.730422e-27	4.731002e-23	2.252858e-24
22	8116020	8132539	NM_014063	DBNL	0.824519	3.186880e-27	5.521907e-23	2.509958e-24
23	8116020	8119648	NM_057161	KLHDC3	0.820989	8.078558e-27	1.399772e-22	6.085964e-24
24	8116020	8173729	NM_001029891	PGAM4	0.820052	1.030353e-26	1.785292e-22	7.438718e-24
25	8116020	8176282	NM_001029891	PGAM4	0.820052	1.030353e-26	1.785292e-22	7.141169e-24
26	8116020	7964466	NM_006400	DCTN2	0.819614	1.154022e-26	1.999573e-22	7.690666e-24
27	8116020	8039796	NM_014453	CHMP2A	0.815820	3.041286e-26	5.269636e-22	1.951717e-23
28	8116020	8134699	NM_006833	COPS6	0.815774	3.077070e-26	5.331639e-22	1.904157e-23
29	8116020	8049180	NM_004846	EIF4E2	0.814963	3.773411e-26	6.538190e-22	2.254548e-23
30	8116020	8074969	NM_001355	DDT	0.813822	5.020988e-26	8.699865e-22	2.899955e-23
31	8116020	7973564	NM_176783	PSME1	0.809669	1.396778e-25	2.420197e-21	7.807087e-23
32	8116020	8030049	NM_017457	CYTH2	0.806925	2.708643e-25	4.693265e-21	1.466645e-22
33	8116020	8004030	NM_015528	RNF167	0.804495	4.827219e-25	8.364122e-21	2.534582e-22
34	8116020	7913256	NM_005216	DDOST	0.803325	6.356347e-25	1.101364e-20	3.239307e-22
35	8116020	8019046	NM_014740	EIF4A3	0.801887	8.893143e-25	1.540915e-20	4.402614e-22
36	8116020	8016980	hsa-mir-142		0.801530	9.663146e-25	1.674333e-20	4.650926e-22
37	8116020	7977657	NM_031314	HNRNPC	0.801396	9.967085e-25	1.726997e-20	4.667559e-22
38	8116020	7967841	NM_001161344	CHFR	0.797780	2.286332e-24	3.961528e-20	1.042507e-21
39	8116020	8043718	NM_001862	COX5B	0.797346	2.522867e-24	4.371372e-20	1.120865e-21
40	8116020	7899737	NM_003757	EIF3I	0.797056	2.694029e-24	4.667943e-20	1.166986e-21
41	8116020	8139706	NM_014302	SEC61G	0.796545	3.024205e-24	5.240041e-20	1.278059e-21
42	8116020	7906703	NM_004550	NDUFS2	0.795795	3.580640e-24	6.204174e-20	1.477184e-21
43	8116020	7999233	NM_032569	GLYR1	0.795171	4.118222e-24	7.135644e-20	1.659452e-21
44	8116020	8146142	NM_178819	AGPAT6	0.794827	4.447993e-24	7.707038e-20	1.751600e-21
45	8116020	8077550	NM_001077525	MTMR14	0.793084	6.554502e-24	1.135699e-19	2.523775e-21
46	8116020	7941709	NM_002896	RBM4	0.791585	9.121869e-24	1.580546e-19	3.435970e-21
47	8116020	7916590	NM_001625	AK2	0.790763	1.092128e-23	1.892331e-19	4.026236e-21
48	8116020	7941478	NM_005146	SART1	0.789685	1.381655e-23	2.393993e-19	4.987485e-21
49	8116020	7928752	NM_014394	GHITM	0.788795	1.675441e-23	2.903037e-19	5.924565e-21
50	8116020	8073192	NM_006003	UQCRFS1	0.787599	2.168318e-23	3.757045e-19	7.514090e-21

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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